Construct: ORF TRCN0000466929
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014053.1_s317c1
- Derived from:
- ccsbBroadEn_10254
- DNA Barcode:
- AAAGATGGGCGAAGTCCGGCACCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ABCA11P (79963)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466929
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79963 | ABCA11P | ATP binding cassette subfam... | NR_002451.2 | 10.4% | 1_1046del;1245_1895del | |
| 2 | human | 10349 | ABCA10 | ATP binding cassette subfam... | NM_080282.3 | 4% | 3.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 167
- ORF end:
- 365
- ORF length:
- 198
- Sequence:
-
1 CCAGCTTGGC ACTTGATGTA ATTCTCCTTG GAATTTGCCC TTTTTGAGTT TGGATCTTGG 61 TTCATTCTCA AGCCTCAGAC AGTGGTTCAA AGTTTTTTTC TTCCATTTCA GGTGTCGTGA 121 GGCTAGCATC GATTGATCAA CAAGTTTGTA CAAAAAAGTT GGCACCATGG ACCCTGAGGG 181 GCAGCAGCAA ATGTGGCAGA TACTTCAGGC TACCATTAAA AACCAGGAGA GGGGCGCCCT 241 CTTGACCACC CATTACATGT CAGAGGCTAA GTCTCTGTGT GACCGTGTGG CCATCATGGT 301 GTCAGGAACG CTAAGGTGTA TTGGTTCCAT TCAACAGCTG AAAAGTTTGG TAAAGATTAT 361 TTACTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT 421 CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC 481 TTGGCTTTAT ATATCTTGTG GAAAGGACGA AAAGATGGGC GAAGTCCGGC ACCAACGCGT 541 TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt