Construct: ORF TRCN0000466934

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004465.1_s317c1
Derived from:
ccsbBroadEn_01887
DNA Barcode:
AATTGTACTGGTACGATGCTTTCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ACOX2 (8309)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466934
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8309 ACOX2 acyl-CoA oxidase 2 NM_003500.4 100% 100%
2 human 8309 ACOX2 acyl-CoA oxidase 2 XM_005265505.1 100% 100%
3 human 8309 ACOX2 acyl-CoA oxidase 2 XM_017007302.2 89.7% 89.7% 0_1ins210
4 human 8309 ACOX2 acyl-CoA oxidase 2 XM_024453786.1 89.7% 89.7% 0_1ins210
5 human 8309 ACOX2 acyl-CoA oxidase 2 XM_006713340.3 85.2% 84.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2109
ORF length:
2043
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg cagcccagtg caccgagtgt cattggggga tacctggagc aggcaaatgc
121accccgacat agagagcgag aggtatatgc agtcctttga cgtggaacgg ctcaccaaca
181tccttgatgg aggtgcccag aacactgcac tccgcaggaa agttgagagc atcatccaca
241gttacccgga gtttagctgt aaggacaatt atttcatgac ccagaatgag cgttataagg
301ctgccatgcg gagggcattc cacatccggt tgatagctcg gcgcctgggt tggttagaag
361atggtcgtga attaggctac gcttacagag ccctttctgg agacgtggcc ttaaatatac
421acagagtctt cgtgagagcc ctcaggagcc tgggctcaga ggagcagatt gccaaatggg
481acccactctg caaaaacatc cagatcatcg caacgtatgc acagacagag ttgggacatg
541ggacatatct tcagggcctg gagactgaag ccacctatga cgcagccacc caggagtttg
601tgatacacag ccccacgctg actgccacca aatggtggcc tggagacttg ggacggtcag
661ccacccatgc cctggtccag gcccagctga tctgctcagg agccaggcgg ggcatgcacg
721cttttattgt gccaatccgg agtcttcagg accacacccc actgccagga atcatcattg
781gggacatcgg acccaagatg gactttgatc aaacagacaa tggcttcctg cagctgaacc
841atgtgcgggt ccccagggag aacatgctga gtcgctttgc acaggtcttg ccagatggca
901cctacgtcaa actcggtaca gcacagagca actaccttcc catggtggtg gtgcgggtgg
961agctgctgtc aggggagatc ctccctatac tgcagaaggc ctgtgtcatc gccatgcgct
1021actcggtcat ccgccgccaa tcccggctcc ggcccagtga cccagaggca aaggtcctgg
1081actaccagac acaacagcag aaactctttc ctcagctggc catcagttat gccttccatt
1141tcctggcagt cagcctcttg gagttcttcc agcactccta cactgccatt ctgaaccaag
1201acttcagctt cctgcctgag ctccacgcac tgagcacggg catgaaggcc atgatgtcag
1261aattctgcac ccagggagct gagatgtgcc gcagggcctg tggcggacat ggctactcaa
1321agctgagtgg cctgccatca ctggtcacca aattgtcggc ctcctgtacc tacgagggtg
1381agaacacagt gctctacctg caggtggcca ggttcctggt gaagagctac ctgcagactc
1441agatgtcccc tggctccacg ccacagagat ctctctctcc atctgtcgca tatctcaccg
1501cacctgacct ggccaggtgt ccagcccaga gggcagccga cttcctctgc ccggagctct
1561acaccacggc ctgggcacat gtggcagtaa ggctcataaa ggactcagtg cagcatttac
1621agaccctgac gcaatccgga gctgaccagc acgaggcttg gaaccagacc actgtcatac
1681accTCCAGGC TGCTAAGGTG CACTGCTACT ATGTCACTGT GAAGGGTTTT ACAGAAGCTC
1741TGGAGAAACT AGAAAATGAA CCAGCGATTC AGCAGGTGCT CAAGCGCCTC TGTGACCTCC
1801ATGCCATACA TGGAATCTTG ACTAACTCGG GTGACTTTCT CCATGACGCC TTCCTGTCTG
1861GTGCCCAAGT GGACATGGCA AGAACAGCCT ACCTGGACCT GCTCCGCCTG ATCCGGAAGG
1921ATGCCATCCT GTTAACTGAT GCTTTTGACT TCACCGATCA GTGTTTAAAT TCAGCACTTG
1981GCTGTTATGA TGGAAACGTC TACGAACGCC TGTTCCAGTG GGCTCAGAAG TCACCAACCA
2041ATACTCAGGA GAACCCTGCC TATGAGGAAT ATATAAGACC ACTTTTACAA AGTTGGAGAT
2101CCAAGCTATG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
2161CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
2221TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAAATTGT ACTGGTACGA TGCTTTCGAC
2281GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)