Transcript: Human XM_024453786.1

PREDICTED: Homo sapiens acyl-CoA oxidase 2 (ACOX2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ACOX2 (8309)
Length:
2432
CDS:
509..2344

Additional Resources:

NCBI RefSeq record:
XM_024453786.1
NBCI Gene record:
ACOX2 (8309)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024453786.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000046214 GCATTCCACATCCGGTTGATA pLKO.1 548 CDS 100% 5.625 3.938 N ACOX2 n/a
2 TRCN0000046216 GCTCAGAAGTCACCAACCAAT pLKO.1 2255 CDS 100% 4.950 3.465 N ACOX2 n/a
3 TRCN0000046213 GCCATCAGTTATGCCTTCCAT pLKO.1 1352 CDS 100% 3.000 2.100 N ACOX2 n/a
4 TRCN0000046215 CGAGAGGTATATGCAGTCCTT pLKO.1 284 5UTR 100% 2.640 1.848 N ACOX2 n/a
5 TRCN0000046217 CCATGCCATACATGGAATCTT pLKO.1 2032 CDS 100% 0.563 0.394 N ACOX2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024453786.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01887 pDONR223 100% 89.7% 89.7% None 0_1ins210 n/a
2 ccsbBroad304_01887 pLX_304 0% 89.7% 89.7% V5 0_1ins210 n/a
3 TRCN0000466934 AATTGTACTGGTACGATGCTTTCG pLX_317 21.1% 89.7% 89.7% V5 0_1ins210 n/a
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