Construct: ORF TRCN0000466957
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009268.1_s317c1
- Derived from:
- ccsbBroadEn_07777
- DNA Barcode:
- AGTAAACTATATCATTCACATCGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GALNT6 (11226)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466957
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | NM_007210.4 | 99.9% | 99.8% | 1397T>C |
| 2 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_005268607.1 | 99.9% | 99.8% | 1397T>C |
| 3 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_006719214.2 | 99.9% | 99.8% | 1397T>C |
| 4 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_011537819.3 | 99.9% | 99.8% | 1397T>C |
| 5 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_011537822.2 | 99.9% | 99.8% | 1397T>C |
| 6 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_017018745.2 | 99.9% | 99.8% | 1397T>C |
| 7 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448811.1 | 99.9% | 99.8% | 1397T>C |
| 8 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448812.1 | 99.9% | 99.8% | 1397T>C |
| 9 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448813.1 | 99.9% | 99.8% | 1397T>C |
| 10 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448814.1 | 99.9% | 99.8% | 1397T>C |
| 11 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448815.1 | 99.9% | 99.8% | 1397T>C |
| 12 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448816.1 | 99.9% | 99.8% | 1397T>C |
| 13 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448817.1 | 99.9% | 99.8% | 1397T>C |
| 14 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XR_001748566.2 | 36.4% | (many diffs) | |
| 15 | mouse | 207839 | Galnt6 | UDP-N-acetyl-alpha-D-galact... | NM_001161767.1 | 87% | 88.4% | (many diffs) |
| 16 | mouse | 207839 | Galnt6 | UDP-N-acetyl-alpha-D-galact... | NM_001161768.1 | 87% | 88.4% | (many diffs) |
| 17 | mouse | 207839 | Galnt6 | UDP-N-acetyl-alpha-D-galact... | NM_172451.3 | 87% | 88.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1935
- ORF length:
- 1866
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaggctcctc cgcagacgcc acatgcccct gcgcctggcc atggtgggct 121 gcgcctttgt gctcttcctc ttcctcctgc atagggatgt gagcagcaga gaggaggcca 181 cagagaagcc gtggctgaag tccctggtga gccggaagga tcacgtcctg gacctcatgc 241 tggaggccat gaacaacctt agagattcaa tgcccaagct ccaaatcagg gctccagaag 301 cccagcagac tctgttctcc ataaaccagt cctgcctccc tgggttctat accccagctg 361 aactgaagcc cttctgggaa cggccaccac aggaccccaa tgcccctggg gcagatggaa 421 aagcatttca gaagagcaag tggacccccc tggagaccca ggaaaaggaa gaaggctata 481 agaagcactg tttcaatgcc tttgccagcg accggatctc cctgcagagg tccctggggc 541 cagacacccg accacctgag tgtgtggacc agaagttccg gcgctgcccc ccactggcca 601 ccaccagcgt gatcattgtg ttccacaacg aagcctggtc cacactgctg cgaacagtgt 661 acagcgtcct acacaccacc cctgccatct tgctcaagga gatcatactg gtggatgatg 721 ccagcacaga ggagcaccta aaggagaagc tggagcagta cgtgaagcag ctgcaggtgg 781 tgagggtggt gcggcaggag gagcggaagg ggctgatcac cgcccggctg ctgggggcca 841 gcgtggcaca ggcggaggtg ctcacgttcc tggatgccca ctgtgagtgc ttccacggct 901 ggctggagcc cctcctggct cgaatcgctg aggacaagac agtggtggtg agcccagaca 961 tcgtcaccat cgaccttaat acttttgagt tcgccaagcc cgtccagagg ggcagagtcc 1021 atagccgagg caactttgac tggagcctga ccttcggctg ggaaacactt cctccacatg 1081 agaagcagag gcgcaaggat gaaacctacc ccatcaaatc cccgacgttt gctggtggcc 1141 tcttctccat ctccaagtcc tactttgagc acatcggtac ctatgataat cagatggaga 1201 tctggggagg ggagaacgtg gaaatgtcct tccgggtgtg gcagtgtggg ggccagctgg 1261 agatcatccc ctgctctgtc gtaggccatg tgttccggac caagagcccc cacaccttcc 1321 ccaagggcac tagtgtcatt gctcgcaatc aagtgcgcct ggcagaggtc tggatggaca 1381 gctacaagaa gattttctat aggagaaatc tgcaggcagc aaagatggcc caagagaaat 1441 ccttcggtga catttcggaa cgaccgcagc tgagggaaca actgcactgt cacaactttt 1501 cctggtacct gcacaatgtc tacccagaga tgtttgttcc tgacctgacg cccaccTTCT 1561 ATGGTGCCAT CAAGAACCTC GGCACCAACC AATGCCTGGA TGTGGGTGAG AACAACCGCG 1621 GGGGGAAGCC CCTCATCATG TACTCCTGCC ACGGCCTTGG CGGCAACCAG TACTTTGAGT 1681 ACACAACTCA GAGGGACCTT CGCCACAACA TCGCAAAGCA GCTGTGTCTA CATGTCAGCA 1741 AGGGTGCTCT GGGCCTTGGG AGCTGTCACT TCACTGGCAA GAATAGCCAG GTCCCCAAGG 1801 ACGAGGAATG GGAATTGGCC CAGGATCAGC TCATCAGGAA CTCAGGATCT GGTACCTGCC 1861 TGACATCCCA GGACAAAAAG CCAGCCATGG CCCCCTGCAA TCCCAGTGAC CCCCATCAGT 1921 TGTGGCTCTT TGTCTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 1981 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 2041 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA AGTAAACTAT ATCATTCACA 2101 TCGAACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt