Construct: ORF TRCN0000466987

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016255.1_s317c1
Derived from:
ccsbBroadEn_04208
DNA Barcode:
TAGGGTTTGACCTTCGTCGAGAGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SP6 (80320)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466987
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80320 SP6 Sp6 transcription factor NM_001258248.2 100% 100%
2 human 80320 SP6 Sp6 transcription factor NM_199262.3 100% 100%
3 human 80320 SP6 Sp6 transcription factor XM_006722115.3 100% 100%
4 mouse 83395 Sp6 trans-acting transcription ... NM_001363230.1 90.7% 96.2% (many diffs)
5 mouse 83395 Sp6 trans-acting transcription ... NM_031183.3 90.7% 96.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1197
ORF length:
1128
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gctaaccgct gtctgcggct ctctgggcag ccagcacacg gaagcgccgc
121acgcctcccc gccgcgcctc gacctgcagc ctctccaaac ttaccagggc cacacgagcc
181ctgaggccgg ggactacccc tccccgctgc agcctggaga gctgcagagc ctcccgctgg
241gcccggaggt ggacttctcg cagggctatg agctgccagg ggcctcctcg cgggtaacct
301gcgaggacct ggaaagcgac agtcccttgg ccccgggccc cttttccaag ctcctgcagc
361cggacatgtc acaccattat gaatcgtggt tcaggccgac tcacccaggc gcggaggatg
421gctcgtggtg ggaccttcat ccgggcacca gctggatgga cctcccccac actcagggcg
481cgctgacctc acctggccac ccgggggcgc ttcaggcggg cttggggggc tacgtcggag
541accaccagct ttgtgccccg ccaccccacc cgcatgcgca ccacctcctt ccagctgccg
601gagggcagca tctcctaggg ccgcccgacg gggctaaggc cttggaagta gccgccccgg
661agtctcaagg gctggattcc agcctggacg gggcggcgcg tcccaaaggc tcccggcggt
721cggtgccccg cagctcaggc cagaccgtct gtcgctgccc caactgtctg gaggcggagc
781gactgggggc tccatgtggg cccgatgggg gcaagaagaa gcatttgcac aactgccaca
841tcccgggctg cgggaaagcc TACGCCAAGA CGTCGCACCT GAAGGCGCAC CTGCGCTGGC
901ACAGCGGCGA CCGTCCCTTC GTGTGCAACT GGCTCTTCTG CGGCAAGCGC TTCACGCGCT
961CGGACGAGCT GCAGCGCCAC CTCCAGACCC ACACCGGCAC CAAGAAGTTC CCCTGTGCAG
1021TCTGCAGCCG CGTCTTCATG CGCAGCGACC ACCTGGCCAA GCACATGAAA ACCCACGAGG
1081GCGCCAAGGA GGAGGCGGCT GGGGCGGCCT CGGGAGAGGG CAAGGCCGGC GGCGCAGTGG
1141AGCCCCCCGG GGGCAAAGGC AAACGCGAGG CCGAGGGCAG CGTGGCTCCC TCCAACTTGC
1201CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1261TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1321ATATATCTTG TGGAAAGGAC GATAGGGTTT GACCTTCGTC GAGAGGACGC GTTAAGTCga
1381caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)