Construct: ORF TRCN0000466996
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016265.1_s317c1
- Derived from:
- ccsbBroadEn_06544
- DNA Barcode:
- AACTTACCAGCTTGCCCCCCGTCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LY6H (4062)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466996
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4062 | LY6H | lymphocyte antigen 6 family... | NM_002347.5 | 99.2% | 100% | 150G>C;231T>C;360C>A |
| 2 | human | 4062 | LY6H | lymphocyte antigen 6 family... | NM_001130478.2 | 86.3% | 86.9% | (many diffs) |
| 3 | human | 4062 | LY6H | lymphocyte antigen 6 family... | NM_001135655.2 | 86.3% | 86.9% | (many diffs) |
| 4 | human | 4062 | LY6H | lymphocyte antigen 6 family... | XM_017013413.1 | 83.7% | 84.3% | (many diffs) |
| 5 | mouse | 23934 | Ly6h | lymphocyte antigen 6 comple... | NM_001135688.1 | 89% | 92.1% | (many diffs) |
| 6 | mouse | 23934 | Ly6h | lymphocyte antigen 6 comple... | NM_001135689.1 | 89% | 92.1% | (many diffs) |
| 7 | mouse | 23934 | Ly6h | lymphocyte antigen 6 comple... | XM_006520899.1 | 89% | 92.1% | (many diffs) |
| 8 | mouse | 23934 | Ly6h | lymphocyte antigen 6 comple... | XM_006520900.2 | 89% | 92.1% | (many diffs) |
| 9 | mouse | 23934 | Ly6h | lymphocyte antigen 6 comple... | XM_006520901.2 | 89% | 92.1% | (many diffs) |
| 10 | mouse | 23934 | Ly6h | lymphocyte antigen 6 comple... | NM_011837.3 | 77.4% | 80.1% | (many diffs) |
| 11 | mouse | 23934 | Ly6h | lymphocyte antigen 6 comple... | XM_011245606.2 | 77.4% | 80.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 486
- ORF length:
- 420
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgct gcctgcagcc atgaagggcc tcggcctGGC GCTGCTGGCC GTCCTGCTGT 121 GCTCGGCGCC CGCTCATGGC CTGTGGTGCC AGGACTGCAC CCTGACCACC AACTCCAGCC 181 ATTGCACCCC AAAGCAGTGC CAGCCGTCCG ACACCGTGTG TGCCAGTGTC CGAATCACCG 241 ATCCCAGCAG CAGCAGGAAG GATCACTCGG TGAACAAGAT GTGTGCCTCC TCCTGCGACT 301 TCGTTAAGCG ACACTTTTTC TCAGACTATC TGATGGGGTT TATTAACTCT GGGATCTTAA 361 AGGTCGACGT GGACTGCTGC GAGAAGGATT TGTGCAATGG GGCGGCAGGG GCAGGGCACA 421 GCCCATGGGC CCTGGCCGGG GGGCTCCTGC TCAGCCTGGG GCCTGCCCTC CTCTGGGCTG 481 GGCCCTGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 541 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 601 CTTGGCTTTA TATATCTTGT GGAAAGGACG AAACTTACCA GCTTGCCCCC CGTCAACGCG 661 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt