Construct: ORF TRCN0000467004

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012445.1_s317c1
Derived from:
ccsbBroadEn_03206
DNA Barcode:
ACATATTCCTGAGATAGCATTCCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PHF20L1 (51105)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467004
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51105 PHF20L1 PHD finger protein 20 like 1 NM_198513.1 100% 100%
2 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013517.1 100% 100%
3 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013516.1 49.7% 49.5% 428_505del;932_941delCGATTTCACC;944_1719del
4 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517088.1 49.3% 49.1% (many diffs)
5 human 51105 PHF20L1 PHD finger protein 20 like 1 NM_001277196.2 28.7% 28.6% 854_863delCGATTTCACC;866_2973del
6 human 51105 PHF20L1 PHD finger protein 20 like 1 NM_001362971.1 28.7% 28.6% 854_863delCGATTTCACC;866_2973del
7 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517081.1 28.7% 28.6% 854_863delCGATTTCACC;866_2976del
8 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013511.1 28.7% 28.6% 854_863delCGATTTCACC;866_2976del
9 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517080.1 28.7% 28.6% 643_645delGTA;857_866delCGATTTCACC;869_2979del
10 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013510.1 28.7% 28.6% 643_645delGTA;857_866delCGATTTCACC;869_2979del
11 human 51105 PHF20L1 PHD finger protein 20 like 1 NM_016018.5 28% 27.9% 428_505del;932_941delCGATTTCACC;944_3051del
12 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517079.1 27.9% 27.8% 428_505del;932_941delCGATTTCACC;944_3054del
13 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013509.1 27.9% 27.8% 428_505del;932_941delCGATTTCACC;944_3054del
14 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517078.1 27.9% 27.8% (many diffs)
15 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_005250931.1 27.8% 27.7% (many diffs)
16 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517077.1 27.8% 27.7% 428_517del;944_953delCGATTTCACC;956_3066del
17 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517075.1 27.8% 27.7% (many diffs)
18 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_011517076.1 27.8% 27.7% (many diffs)
19 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013513.1 15.1% 15% (many diffs)
20 human 51105 PHF20L1 PHD finger protein 20 like 1 XM_017013514.2 15.1% 15% (many diffs)
21 human 51105 PHF20L1 PHD finger protein 20 like 1 NR_156424.2 14.3% (many diffs)
22 human 51105 PHF20L1 PHD finger protein 20 like 1 XR_001745533.1 14.1% (many diffs)
23 human 51105 PHF20L1 PHD finger protein 20 like 1 XR_001745536.1 13.4% (many diffs)
24 human 51105 PHF20L1 PHD finger protein 20 like 1 XR_001745535.1 13.4% (many diffs)
25 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520926.3 91.5% 90.8% (many diffs)
26 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520921.3 26.4% 26.1% (many diffs)
27 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_017316601.1 26.4% 26.1% (many diffs)
28 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520920.3 26.4% 26.1% (many diffs)
29 mouse 239510 Phf20l1 PHD finger protein 20-like 1 NM_001081409.1 25.7% 25.4% (many diffs)
30 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520919.3 25.7% 25.4% (many diffs)
31 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520918.3 25.6% 25.3% (many diffs)
32 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520916.3 25.6% 25.3% (many diffs)
33 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XM_006520917.3 25.6% 25.3% (many diffs)
34 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781526.1 9.2% (many diffs)
35 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781524.1 9.1% (many diffs)
36 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781525.1 9% (many diffs)
37 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781528.1 9% (many diffs)
38 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781531.1 8.9% (many diffs)
39 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781529.1 8.8% (many diffs)
40 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781530.1 8.8% (many diffs)
41 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781527.1 7.4% (many diffs)
42 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781533.1 6.8% (many diffs)
43 mouse 239510 Phf20l1 PHD finger protein 20-like 1 XR_001781532.1 6.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
921
ORF length:
855
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag taaaaagccc ccaaatcgcc ctggaatcac ttttgagatt ggtgctcgtt
121tggaggcact ggactactta caaaaatggt atccatcacg aattgaaaaa attgactatg
181aggagggcaa gatgttggtc cattttgagc gctggagtca tcgttatgat gagtggattt
241actgggatag caatagattg cgaccccttg agagaccagc actaagaaaa gaagggctaa
301aagatgagga agatttcttt gattttaaag ctggagaaga agttctggct cgttggacag
361actgtcgcta ttaccctgcc aagattgaag caattaacaa agaaggaaca tttacagttc
421agttttatga tggagtaatt cgttgtttaa aaagaatgca cattaaagcc atgcccgagg
481atgctaaggg gcaggattgg atagctttag tcaaagcagc tgctgcagct gcagccaaga
541acaaaacagg gagtaaacct cgaaccagcg ctaacagcaa taaagataag gataaagatg
601agagaaagtg gtttaaagta ccttcaaaga aggaggaaac ttcaacttgt atagccacac
661cagacgtaga gaagaaggaa gatctgccTA CATCTAGTGA AACATTTGGA CTTCATGTAG
721AGAACGTTCC AAAGATGGTC TTTCCACAGC CAGAGAGCAC ATTATCAAAC AAGAGGAAAA
781ATAATCAAGG CAACTCGTTT CAGGCAAAGA GAGCTCGACT TAACAAGATT ACTGGTTTGT
841TGGCATCCAA AGCTGTTGGG GTTGATGGTG CTGAAAAAAA GGAAGACTAC AATGAAACAG
901CTCCAATGCT GGAGCAGGTA TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
961CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1021AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAACAT ATTCCTGAGA
1081TAGCATTCCT ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)