Construct: ORF TRCN0000467046
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006098.1_s317c1
- Derived from:
- ccsbBroadEn_12120
- DNA Barcode:
- ACCTGGACCTAACAACAGGTACAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ODR4 (54953)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467046
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54953 | ODR4 | odr-4 GPCR localization fac... | NM_001164246.1 | 86.4% | 83.1% | (many diffs) |
| 2 | human | 54953 | ODR4 | odr-4 GPCR localization fac... | NM_017847.6 | 82.1% | 82.1% | 1_243del |
| 3 | human | 54953 | ODR4 | odr-4 GPCR localization fac... | XM_011509660.2 | 82.1% | 82.1% | 1_243del |
| 4 | human | 54953 | ODR4 | odr-4 GPCR localization fac... | NM_001164245.1 | 77% | 77% | 1_243del;710_711ins69 |
| 5 | human | 54953 | ODR4 | odr-4 GPCR localization fac... | XM_011509661.2 | 69.2% | 69.1% | 1_243del;1187delT;1188_1189ins175 |
| 6 | human | 54953 | ODR4 | odr-4 GPCR localization fac... | XM_017001543.2 | 40.2% | 39.6% | (many diffs) |
| 7 | mouse | 226499 | BC003331 | cDNA sequence BC003331 | XM_006529449.3 | 85.5% | 84.7% | (many diffs) |
| 8 | mouse | 226499 | BC003331 | cDNA sequence BC003331 | NM_145511.2 | 70.3% | 69.6% | (many diffs) |
| 9 | mouse | 226499 | BC003331 | cDNA sequence BC003331 | NM_001077237.1 | 63.9% | 63.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1185
- ORF length:
- 1119
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgct accaggggga cttttagttc ttggagtatt tattattact actttagaac 121 tggcaaatga ttttcaaaat gccctgcgta gactaatgtt tgctgtggaa aagtctataa 181 atagaaagag attgtggaat ttcacagagg aggaagtctc agaacgagtg acacttcaca 241 tttgtgcttc tacaaaaaaa atattttgtc gaacttatga tatccatgat ccaaagagtt 301 cagcaagacc agcagattgg aagtatcaaa gtggattatc atcctcatgg ctttctttag 361 agtgtacagt tcacattaat attcacatcc cactttctgc tacttctgtc agctatactc 421 tggagaaaaa tacaaagaat ggacttacac gctgggccaa ggaaatagaa aatggtgttt 481 atttgattaa tggacaagtt aaagatgaag attgtgacct attagaagga cagaaaaaat 541 cttctagagg aaatactcaa gcaactagtc attcttttga tgtcagagtg ctaacgcagt 601 tgctcctgaa ttcagaccac agatccacag ccacagtcca gatatgtagc ggttctgtaa 661 accttaaggg tgctgtgaaa tgcagagctt atatccacag cagtaaaccc aaagttaaag 721 atgctgtgca ggcagtaaag agggatatat tgaacacagt tgctgatcgt tgtgaaatgc 781 tatttgagga tctgcttttg aatgaaattc cagaaaaaaa agattctgaa aaagagttcc 841 acgTCCTCCC TTATCGAGTC TTTGTTCCCC TTCCTGGATC CACTGTAATG TTGTGTGATT 901 ATAAATTTGA CGATGAGTCA GCTGAAGAAA TCAGGGACCA TTTTATGGAG ATGTTGGATC 961 ACACAATTCA AATAGAAGAT TTGGAAATTG CAGAGGAAAC AAACACAGCT TGTATGAGTT 1021 CTTCTATGAA TAGTCAAGCT TCATTGGACA ACACAGATGA TGAACAACCA AAACAACCAA 1081 TTAAAACTAC AATGTTATTG AAAATTCAGC AAAACATAGG TGTGATTGCA GCATTTACAG 1141 TTGCAGTCCT TGCTGCGGGT ATCTCCTTTC ATTACTTCAG TGATTACCCA ACTTTCTTGT 1201 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1261 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1321 GAAAGGACGA ACCTGGACCT AACAACAGGT ACAAACGCGT TAAGTCgaca atcaacctct 1381 ggattacaaa atttgtgaaa gatt