Construct: ORF TRCN0000467289

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014014.1_s317c1
Derived from:
ccsbBroadEn_11185
DNA Barcode:
TTGGGCCAAGATATCTAAGAACAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TEAD1 (7003)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467289
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7003 TEAD1 TEA domain transcription fa... NM_021961.6 82% 82% 1_45del;329_330insGGTAACAAGCAT;699_872del
2 mouse 21676 Tead1 TEA domain family member 1 NM_009346.3 78.7% 85.3% (many diffs)
3 mouse 21676 Tead1 TEA domain family member 1 NM_001166585.1 77.8% 84.3% (many diffs)
4 mouse 21676 Tead1 TEA domain family member 1 XM_006507563.2 77.8% 84.3% (many diffs)
5 mouse 21676 Tead1 TEA domain family member 1 XM_006507562.2 77.2% 83.3% (many diffs)
6 mouse 21676 Tead1 TEA domain family member 1 XM_011241723.1 76.4% 82.4% (many diffs)
7 mouse 21676 Tead1 TEA domain family member 1 NM_001166584.1 75% 81.1% (many diffs)
8 mouse 21676 Tead1 TEA domain family member 1 XM_006507561.2 74% 80.2% (many diffs)
9 mouse 21676 Tead1 TEA domain family member 1 XM_006507564.2 73.8% 80.2% (many diffs)
10 mouse 21676 Tead1 TEA domain family member 1 XM_006507565.2 72.8% 79.2% (many diffs)
11 mouse 21676 Tead1 TEA domain family member 1 XM_011241724.1 63.6% 66.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1140
ORF length:
1071
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaaaggatg agtgactctg cagataagcc aattgacaat gatgcagaag
121gggtctggag ccccgacatc gagcaaagct ttcaggaggc cctggctatc tatccaccat
181gtgggaggag gaaaatcatc ttatcagacg aaggcaaaat gtatggtagg aatgaattga
241tagccagata catcaaactc aggacaggca agacgaggac cagaaaacag gtgtctagtc
301acattcaggt tcttgccaga aggaaatctc gtgattttca ttccaagcta aaggtaacaa
361gcatggatca gactgcaaag gataaggccc tgcagcacat ggcggccatg tcctcagccc
421agatcgtctc ggccactgcc attcataaca agctggggct gcctgggatt ccacgcccga
481ccttcccagg ggcgccgggg ttctggccgg gaatgattca aacagggcag ccaggatcct
541cacaagacgt caagcctttt gtgcagcagg cctaccccat ccagccagcg gtcacagccc
601ccattccagg gtttgagcct gcatcggccc cagctccctc agtccctgcc tggcaaggtc
661gctccattgg cacaaccaag cttcgcctgg tggaattttc agcttttctc gagcagcagc
721gagacccaga ctcggctgat ttaaactgca atattcaaga tgatgctggg gctttttatg
781gtgtaaccag tcagtacgag agttcTGAAA ATATGACAGT CACCTGTTCC ACCAAAGTTT
841GCTCCTTTGG GAAGCAAGTA GTAGAAAAAG TAGAGACGGA GTATGCAAGG TTTGAGAATG
901GCCGATTTGT ATACCGAATA AACCGCTCCC CAATGTGTGA ATATATGATC AACTTCATCC
961ACAAGCTCAA ACACTTACCA GAGAAATATA TGATGAACAG TGTTTTGGAA AACTTCACAA
1021TTTTATTGGT GGTAACAAAC AGGGATACAC AAGAAACTCT ACTCTGCATG GCCTGTGTGT
1081TTGAAGTTTC AAATAGTGAA CACGGAGCAC AACATCATAT TTACAGGCTT GTAAAGGACT
1141TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1201GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1261TTTATATATC TTGTGGAAAG GACGATTGGG CCAAGATATC TAAGAACAGA CGCGTTAAGT
1321Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)