Transcript: Human NM_021961.6

Homo sapiens TEA domain transcription factor 1 (TEAD1), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
TEAD1 (7003)
Length:
9417
CDS:
622..1902

Additional Resources:

NCBI RefSeq record:
NM_021961.6
NBCI Gene record:
TEAD1 (7003)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_021961.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000015800 CCGATTTGTATACCGAATAAA pLKO.1 1662 CDS 100% 15.000 21.000 N TEAD1 n/a
2 TRCN0000297375 CCGATTTGTATACCGAATAAA pLKO_005 1662 CDS 100% 15.000 21.000 N TEAD1 n/a
3 TRCN0000015802 CCATTCTTACAGTGACCCATT pLKO.1 1359 CDS 100% 4.050 3.240 N TEAD1 n/a
4 TRCN0000277980 CCATTCTTACAGTGACCCATT pLKO_005 1359 CDS 100% 4.050 3.240 N TEAD1 n/a
5 TRCN0000015798 GCCCTGTTTCTAATTGTGGTA pLKO.1 2221 3UTR 100% 2.640 2.112 N TEAD1 n/a
6 TRCN0000297070 GCCCTGTTTCTAATTGTGGTA pLKO_005 2221 3UTR 100% 2.640 2.112 N TEAD1 n/a
7 TRCN0000015799 CCAGAAGGAAATCTCGTGATT pLKO.1 914 CDS 100% 4.950 3.465 N TEAD1 n/a
8 TRCN0000277979 CCAGAAGGAAATCTCGTGATT pLKO_005 914 CDS 100% 4.950 3.465 N TEAD1 n/a
9 TRCN0000015801 GCTCAAACACTTACCAGAGAA pLKO.1 1725 CDS 100% 4.950 3.465 N TEAD1 n/a
10 TRCN0000278040 GCTCAAACACTTACCAGAGAA pLKO_005 1725 CDS 100% 4.950 3.465 N TEAD1 n/a
11 TRCN0000085867 CAGAAGGAAATCTCGTGATTT pLKO.1 915 CDS 100% 1.320 0.924 N Tead1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_021961.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11185 pDONR223 100% 82% 82% None 1_45del;329_330insGGTAACAAGCAT;699_872del n/a
2 ccsbBroad304_11185 pLX_304 0% 82% 82% V5 1_45del;329_330insGGTAACAAGCAT;699_872del n/a
3 TRCN0000467289 TTGGGCCAAGATATCTAAGAACAG pLX_317 31.5% 82% 82% V5 1_45del;329_330insGGTAACAAGCAT;699_872del n/a
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