Construct: ORF TRCN0000467516

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013274.1_s317c1
Derived from:
ccsbBroadEn_12432
DNA Barcode:
CAGGTCTCGCGGGTCGCGTGAAGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
THADA (63892)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467516
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 63892 THADA THADA armadillo repeat cont... NM_001271644.2 100% 100%
2 human 63892 THADA THADA armadillo repeat cont... NM_001271643.2 95.3% 95% (many diffs)
3 human 63892 THADA THADA armadillo repeat cont... XM_011533015.3 69.5% 69.3% (many diffs)
4 human 63892 THADA THADA armadillo repeat cont... XM_006712068.3 61.4% 61.3% (many diffs)
5 human 63892 THADA THADA armadillo repeat cont... XM_006712065.1 47.5% 47.4% (many diffs)
6 human 63892 THADA THADA armadillo repeat cont... XM_006712064.2 46.7% 46.6% (many diffs)
7 human 63892 THADA THADA armadillo repeat cont... XM_006712067.1 46.6% 42.9% (many diffs)
8 human 63892 THADA THADA armadillo repeat cont... NM_001345923.1 45.7% 45.6% (many diffs)
9 human 63892 THADA THADA armadillo repeat cont... NM_001083953.1 45.7% 45.6% (many diffs)
10 human 63892 THADA THADA armadillo repeat cont... NM_001345925.1 45.7% 45.6% (many diffs)
11 human 63892 THADA THADA armadillo repeat cont... NM_022065.4 45.7% 45.6% (many diffs)
12 human 63892 THADA THADA armadillo repeat cont... XM_006712066.1 45.3% 43.1% (many diffs)
13 human 63892 THADA THADA armadillo repeat cont... NR_073394.1 44.8% (many diffs)
14 human 63892 THADA THADA armadillo repeat cont... NR_144316.1 44.6% (many diffs)
15 human 63892 THADA THADA armadillo repeat cont... NM_001345924.1 43.7% 43.5% (many diffs)
16 human 63892 THADA THADA armadillo repeat cont... XM_006712063.1 43.6% 43.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2748
ORF length:
2682
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg tgtaaagaag aagaaagaaa tgcaagttgc tgcgctgacc atttgccatc
121aggaccttga aactttgaaa tcttttgctg atgtggaagg gaaaaatcta gcttctttgc
181tgttacattg tgtgcaactc acggatggag tgtcacaaat ccattatatt aaacagattg
241tgcctctgct ggagaaagca gataaaaatg gcatgtgtga tcccactatt caaagttgtt
301tggatatctt agcaggcatt tatctttctt tgagtctaaa gaatcccttg aagaaagtat
361tggcaagctc actaaatagc ctgcctgatt tttttctacc tgaggctatg caccgtttta
421cttctcgtct tcaggaagaa ttgaatacta ctgacttata ctcttacagg aaagttactg
481acaatatttc ttcctgtatg gagaacttta acttgggtag agcaagtgtt aataatctgc
541ttaaaaatgt gcttcatttt ctgcagaaga gtttaattga aatcctggaa gaaaatagaa
601aatgtgctgg aaatcatatt attcaaacac agttgatgaa tgacttactg gtaggcatta
661gagtttcaat gatgttagta cagaaagtac aagatttcca gggaaatctt tggaagactt
721ccgattctcc catatggcaa aatatgtgtg gattgctgag tatttttacc aaggttttaa
781gcgatgatga tctgttacag actgtacaga gcacatctgg attagctatt attcttttta
841ttaagactat gtttcacccg tctgaaaaga ttcctcattt gattagcagt gtgctgcttc
901gttcagtgga ctgcaccagt gtccccgagt ggtttatgag cagctgcagg agcctctgtt
961gtggtgacat ctctcagtca gctgtcttat tcctctgtca ggggacactt gccatgttgg
1021actggcagaa cggaagcatg ggtcggagtg gggaggccct gctcttggat actgcacatg
1081ttttgttcac cttgagttca cagattaaag agccaacgct ggaaatgttt ctgtctagaa
1141tcttagcatc ctggactaat tcagccatac aagtccttga atcaagttcc ccgagcctaa
1201cggacagcct gaatgggaat tcaagtatag ttgggagact tttggaatat gtctataccc
1261attgggaaca tccattggat gctctgagac accaaaccaa aatcatgttc aaaaaccttc
1321tccaaatgca ccggctcact gtggaaggtg cagatttcgt ccctgatcct ttctttgtgg
1381aattgactga gagtctttta cgattggaat ggcatattaa aggaaagtac acgtgccttg
1441gttgtttggt agagtgcata ggagttgaac atattttggc tatagataaa actattccat
1501ctcaaatctt agaggtgatg ggagaccagt cattggtacc ttatgcaagt gacctcttgg
1561aaaccatgtt tagaaatcat aagagtcatt tgaaatccca gactgctgag agttcttgga
1621ttgaccagtg gcatgagact tgggtttctc ctctcctttt tatattgtgt gaaggaaact
1681tggatcaaaa atcttacgtg attgattatt acttgccaaa attattaagt tacagccctg
1741aaagcttaca gtacatggta aagattcttc agacttctat tgatgctaaa actggacaag
1801agcaatcttt cccatcctta gggtcttgta atagcagggg ggctctggga gctttgatgg
1861catgtctgcg aatagctaga gctcatggac atcttcagtc tgcaactgat acctgggaga
1921acctcgtgtc tgatgcaaga ataaagcaag gcttaattca tcagcattgc caagtaagga
1981tagatacatt aggcttgctt tgtgaaagta atcggagcac agaaattgtt tccatggaag
2041aaatgcagtg gattcagttc tttattacat acaatcttaa cagccagtct ccaggagtgc
2101ggcaacagat ctgttctctt cttaaaaagt tgttttgtag gatacaggaa agttctcagg
2161tactttataa attggagcag agtaaatcca aacgtgaacc agagaatgag ttaaccaaac
2221agcacccttc tgtttcttta cagcagtata agaatttcat gtcatccatt tgtaacagtc
2281tttttgaagc attgtttcct ggatcttcct actcgactag attttcagct ttaaccattt
2341taggttcaat agctgaagtt tttcatgtcc cagaaggcag aatttataca gtatatcagc
2401tgagtcatga tattGATGTT GGTCGTTTCC AAACACTAAT GGAATGTTTT ACCAGCACTT
2461TTGAAGACGT GAAAATTTTA GCATTTGATC TTCTGATGAA GTTATCAAAA ACAGCTGTAC
2521ATTTTCAGGA TTCGGGGAAA CTGCAAGGCT TATTTCAGGC AGCATTGGAG CTCAGCACAA
2581GCACCAAACC ATACGACTGT GTGACAGCTT CCTACCTGCT GAACTTCTTA ATCTGGCAGG
2641ATGCTCTACC GTCATCCTTG TCTGCCTACT TAACTCAGCA AGTTGCATGT GATAATGGAG
2701ATAGGCCTGC TGCTGTGGTG GAAAGGAACA CATTAATGGG TTTGTATTGC CCAACTTTCT
2761TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
2821CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
2881GTGGAAAGGA CGACAGGTCT CGCGGGTCGC GTGAAGGACG CGTTAAGTCg acaatcaacc
2941tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)