Construct: ORF TRCN0000467581

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000864.1_s317c1
Derived from:
ccsbBroadEn_05863
DNA Barcode:
ATCAACAGTCTTACTCATCACACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATF3 (467)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467581
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 467 ATF3 activating transcription fa... NM_001030287.3 99.8% 99.4% 533C>A
2 human 467 ATF3 activating transcription fa... NM_001674.4 99.8% 99.4% 533C>A
3 human 467 ATF3 activating transcription fa... XM_005273146.1 99.8% 99.4% 533C>A
4 human 467 ATF3 activating transcription fa... XM_011509579.1 99.8% 99.4% 533C>A
5 human 467 ATF3 activating transcription fa... NM_001206484.3 68.3% 67.9% 0_1ins171;362C>A
6 human 467 ATF3 activating transcription fa... NM_001206488.3 68.3% 67.9% 0_1ins171;362C>A
7 human 467 ATF3 activating transcription fa... NM_001040619.3 68.2% 65.5% (many diffs)
8 human 467 ATF3 activating transcription fa... NM_001206486.2 52.6% 50% (many diffs)
9 human 467 ATF3 activating transcription fa... XR_001737203.1 18.2% (many diffs)
10 mouse 11910 Atf3 activating transcription fa... NM_007498.3 88.7% 94.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
609
ORF length:
543
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61tgggcatgat gcttcaacac ccaggccagg tctctgcctc ggaagtgagt gcttctgcca
121tcgtcccctg cctgtcccct cctgggtcac tggtgtttga ggattttgct aacctgacgc
181cctttGTCAA GGAAGAGCTG AGGTTTGCCA TCCAGAACAA GCACCTCTGC CACCGGATGT
241CCTCTGCGCT GGAATCAGTC ACTGTCAGCG ACAGACCCCT CGGGGTGTCC ATCACAAAAG
301CCGAGGTAGC CCCTGAAGAA GATGAAAGGA AAAAGAGGCG ACGAGAAAGA AATAAGATTG
361CAGCTGCAAA GTGCCGAAAC AAGAAGAAGG AGAAGACGGA GTGCCTGCAG AAAGAGTCGG
421AGAAGCTGGA AAGTGTGAAT GCTGAACTGA AGGCTCAGAT TGAGGAGCTC AAGAACGAGA
481AGCAGCATTT GATATACATG CTCAACCTTC ATCGGCCCAC GTGTATTGTC CGGGCTCAGA
541ATGGGAGGAC TCCAGAAGAT GAGAGAAACC TCTTTATCCA ACAGATAAAA GAAGGAAAAT
601TGCAGAGCTA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
661CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
721TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAATCAAC AGTCTTACTC ATCACACCAC
781GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)