Construct: ORF TRCN0000467652
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010526.2_s317c1
- Derived from:
- ccsbBroadEn_09527
- DNA Barcode:
- ATGGGACCATTCACCGAGACTTCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ACVR1C (130399)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467652
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_145259.3 | 99.7% | 99.5% | (many diffs) |
| 2 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_001111031.1 | 89.6% | 89.4% | (many diffs) |
| 3 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_001111032.2 | 83.5% | 83.3% | (many diffs) |
| 4 | human | 130399 | ACVR1C | activin A receptor type 1C | NM_001111033.2 | 67.9% | 67.9% | (many diffs) |
| 5 | mouse | 269275 | Acvr1c | activin A receptor, type IC | NM_001111030.1 | 85.8% | 92.4% | (many diffs) |
| 6 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XM_006498085.3 | 77.3% | 84.3% | (many diffs) |
| 7 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XM_011239108.2 | 77.3% | 84.3% | (many diffs) |
| 8 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XM_006498086.3 | 73% | 79.3% | (many diffs) |
| 9 | mouse | 269275 | Acvr1c | activin A receptor, type IC | NM_001033369.3 | 64.5% | 71.1% | (many diffs) |
| 10 | mouse | 269275 | Acvr1c | activin A receptor, type IC | XR_374097.3 | 17.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1545
- ORF length:
- 1479
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgac ccgggcgctc tgctcagcgc tccgccaggc tctcctgctg ctcgcagcgg 121 ccgccgagct ctcgccagga ctgaagtgtg tatgtctttt gtgtgattct tcaaacttta 181 cctgccaaac agaaggagca tgttgggcat cagtcatgct aaccaatgga aaagagcagg 241 tgatcaaatc ctgtgtctcc cttccagaac tgaatgctca agtcttctgt catagttcca 301 acaatgttac caaaaccgaa tgctgcttca cagatttttg caacaacata acactgcacc 361 ttccaacagc atcaccaaat gccccaaaac ttggacccat ggagctggcc atcattatta 421 ctgtgcctgt ttgcctcctg tccatagctg cgatgctgac agtatgggca tgccagggtc 481 gacagtgctc ctacaggaag aaaaagagac caaatgtgga ggaaccactc tctgagtgca 541 atctggtaaa tgctggaaaa actctgaaag atctgattta tgatgtgacc gcctctggat 601 ctggctctgg tctacctctg ttggttcaaa ggacaattgc aaggacgatt gtgcttcagg 661 aaatagtagg aaaaggtaga tttggtgagg tgtggcatgg aagatggtgt ggggaagatg 721 tggctgtgaa aatattctcc tccagagatg aaagatattg gtttcgtgag gcagaaattt 781 accagacggt catgctgcga catgaaaaca tccttggttt cattgctgct gacaacaaag 841 ataatggaac ttggactcaa ctttggctgg tatctgaata tcatgaacag ggctccttat 901 atgactattt gaatagaaat atagtgacca tggctggaat gatcaagctg gcgctctcaa 961 ttgctagtgg tctggcacac cttcatatgg agattgttgg tacacaaggt aaacctgcta 1021 ttgctcatcg agacataaaa tcaaagaata tcttagtaaa aaagtgtgaa acttgtgcca 1081 tagcggactt agggttggct gtgaagcatg attcaatact gaacactatc gacatacctc 1141 agaatccTAA AGTGGGAACC AAGAGGTATA TGGCTCCTGA AATGCTTGAT GATACAATGA 1201 ATGTGAATAT CTTTGAGTCC TTCAAACGAG CTGACATCTA TTCTGTTGGT CTGGTTTACT 1261 GGGAAATAGC CCGGAGGTGT TCAGTCGGAG GAATTGTTGA GGAGTACCAA TTGCCTTATT 1321 ATGACATGGT GCCTTCAGAT CCCTCGATAG AGGAAATGAG AAAGGTTGTT TGTGACCAGA 1381 AGTTTCGACC AAGTATCCCA AACCAGTGGC AAAGTTGTGA AGCACTCCGA GTCATGGGGA 1441 GAATAATGCG TGAGTGTTGG TATGCCAACG GAGCGGCCCG CCTAACTGCT CTTCGTATTA 1501 AGAAGACTAT ATCTCAACTT TGTGTCAAAG AAGACTGCAA AGCCTACCCA ACTTTCTTGT 1561 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1621 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1681 GAAAGGACGA ATGGGACCAT TCACCGAGAC TTCTACGCGT TAAGTCgaca atcaacctct 1741 ggattacaaa atttgtgaaa gatt