Construct: ORF TRCN0000467687

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008823.1_s317c1
Derived from:
ccsbBroadEn_09682
DNA Barcode:
AATCACCCGCAGAAGCTTTCGACG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CMTM8 (152189)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467687
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 152189 CMTM8 CKLF like MARVEL transmembr... NM_178868.5 99.4% 98.8% 122C>A;204C>A;236T>C
2 human 152189 CMTM8 CKLF like MARVEL transmembr... XM_011533416.3 87.7% 87.2% (many diffs)
3 human 152189 CMTM8 CKLF like MARVEL transmembr... XM_017005779.1 72.3% 71.2% (many diffs)
4 human 152189 CMTM8 CKLF like MARVEL transmembr... NM_001320308.1 66.2% 65.8% 122C>A;147_148ins174
5 human 152189 CMTM8 CKLF like MARVEL transmembr... XM_017005780.1 57.6% 57.2% 0_1ins219;17T>C
6 mouse 70031 Cmtm8 CKLF-like MARVEL transmembr... NM_027294.2 86.3% 91.3% (many diffs)
7 mouse 70031 Cmtm8 CKLF-like MARVEL transmembr... XM_011242999.2 50.6% 52.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
585
ORF length:
519
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga ggagccgcag cgcgcccgct cgcacacagt caccaccacc gccagctcct
121tcgcagagaa cttctccacc agcagcagca gcttcgccTA CGACCGGGAG TTCCTCCGCA
181CCCTGCACGG CTTCCTCATC GTGGCCGAGA TCGTTCTGGG GCTGCTGGTA TGGACGCTTA
241TTGCTGGAAC TGAGTACTTC CGGGTCCCAG CATTTGGCTG GGTCATGTTT GTAGCTGTAT
301CTTACTGGGT CCTCACCGTC TTCTTCCTCA TTATCTACAT AACAATGACC TACACCAGGA
361TTCCCCAGGT GCCCTGGACA ACAGTGGGCC TGTGCTTTAA CGGCAGTGCC TTCGTCTTGT
421ACCTCTCTGC CGCTGTTGTA GATGCATCTT CCGTCTCCCC TGAGAGGGAC AGTCACAACT
481TCAACAGCTG GGCGGCCTCA TCGTTCTTTG CCTTCCTGGT CACCATCTGC TACGCTGGAA
541ATACATATTT CAGTTTTATA GCATGGAGAT CCAGGACCAT ACAGTGCCCA ACTTTCTTGT
601ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
661AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
721GAAAGGACGA AATCACCCGC AGAAGCTTTC GACGACGCGT TAAGTCgaca atcaacctct
781ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)