Construct: ORF TRCN0000467756
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009518.1_s317c1
- Derived from:
- ccsbBroadEn_05441
- DNA Barcode:
- TACCTGTACCTGCCAGTTCTCTTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC84 (338657)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467756
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 338657 | CCDC84 | coiled-coil domain containi... | NM_198489.3 | 100% | 100% | |
| 2 | human | 338657 | CCDC84 | coiled-coil domain containi... | XR_246426.3 | 79.1% | 1_78del;654_687del;1109_1258del | |
| 3 | human | 338657 | CCDC84 | coiled-coil domain containi... | XR_246425.3 | 78.9% | 1_77del;757_758ins31;1043_1192del | |
| 4 | human | 338657 | CCDC84 | coiled-coil domain containi... | NR_104049.2 | 77.6% | 1_60del;574_601del;1085_1282del | |
| 5 | human | 338657 | CCDC84 | coiled-coil domain containi... | XR_246429.3 | 77.5% | (many diffs) | |
| 6 | human | 338657 | CCDC84 | coiled-coil domain containi... | XR_246430.4 | 77.2% | (many diffs) | |
| 7 | human | 338657 | CCDC84 | coiled-coil domain containi... | NR_104050.2 | 76.5% | (many diffs) | |
| 8 | human | 338657 | CCDC84 | coiled-coil domain containi... | XR_001747856.1 | 76.5% | (many diffs) | |
| 9 | human | 338657 | CCDC84 | coiled-coil domain containi... | NR_104051.2 | 64.5% | (many diffs) | |
| 10 | human | 338657 | CCDC84 | coiled-coil domain containi... | XM_011542799.1 | 60.2% | 60.2% | 0_1ins396 |
| 11 | human | 338657 | CCDC84 | coiled-coil domain containi... | XM_011542800.2 | 60.2% | 60.2% | 0_1ins396 |
| 12 | mouse | 382073 | Ccdc84 | coiled-coil domain containi... | NM_201372.3 | 85.3% | 85.8% | (many diffs) |
| 13 | mouse | 382073 | Ccdc84 | coiled-coil domain containi... | XM_006510472.2 | 83.7% | 84.3% | (many diffs) |
| 14 | mouse | 382073 | Ccdc84 | coiled-coil domain containi... | XR_379124.3 | 61.6% | (many diffs) | |
| 15 | mouse | 382073 | Ccdc84 | coiled-coil domain containi... | XR_379123.2 | 60.5% | (many diffs) | |
| 16 | mouse | 382073 | Ccdc84 | coiled-coil domain containi... | XR_001778938.1 | 49.6% | (many diffs) | |
| 17 | mouse | 382073 | Ccdc84 | coiled-coil domain containi... | XR_001778937.1 | 47.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1065
- ORF length:
- 996
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcgccggcg cagcgctgcc ctctgtgccg ccagaccttc ttctgtggtc 121 gcgggcacgt ttacagccgc aagcaccagc ggcagctgaa ggaggctttg gagaggctcc 181 tgccccaggt ggaggcggcc cgcaaggcca tccgcgccgc tcaggtggag cgctatgtgc 241 ccgaacacga gcgatgctgc tggtgcctgt gctgcggctg tgaggtgcgg gaacacctga 301 gccatggaaa cctgacggtg ctgtacgggg ggctgctgga gcatctggcc agcccagagc 361 acaagaaagc aaccaacaaa ttctggtggg agaacaaagc tgaggtccag atgaaagaga 421 agtttctggt cactccccag gattatgcgc gattcaagaa atccatggtg aaaggtttgg 481 attcctatga agaaaaggag gataaagtga tcaaggagat ggcagctcag atccgtgagg 541 tggagcagag ccgacaggag gtggttcggt ctgtcttaga gcctcaggca gtgccagacc 601 cagaagaggg ctcttcagca cctagaagct ggaaagggat gaacagccaa gtagcttcca 661 gcttacagca gccctcaaat ttggacctgc caccagctcc agagcttgac tggatggaga 721 caggaccatc tctgacattc attggccatc aggatatacc aggagttggt aacatccact 781 caggtgccac acctccctgg atgatccaag atgaagaata cattgctggg aaccaagaaa 841 taggaccatc ctatgaagaa tttcttaaag aaaaggaaaa acagaagttg aaaaaactcc 901 ccccagaccg agttGGGGCC AACTTTGATC ACAGCTCCAG GACCAGTGCA GGCTGGCTGC 961 CCTCTTTTGG CCGCGTCTGG AATAATGGAC GCCGCTGGCA GTCCAGACAT CAATTCAAAA 1021 CTGAAGCTGC AGCAATGAAG AAGCAGTCAC ATACAGAAAA AAGCTTGCCA ACTTTCTTGT 1081 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1141 AGTAATGAAC TAGCCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1201 GAAAGGACGA TACCTGTACC TGCCAGTTCT CTTCACGCGT TAAGTCgaca atcaacctct 1261 ggattacaaa atttgtgaaa gatt