Construct: ORF TRCN0000467884
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007349.1_s317c1
- Derived from:
- ccsbBroadEn_13237
- DNA Barcode:
- ACCCGCGACTCCAGGATTGTGATT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC37BP1 (147172)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467884
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114659 | LRRC37B | leucine rich repeat contain... | NM_001321350.2 | 19.2% | 17.4% | (many diffs) |
| 2 | human | 114659 | LRRC37B | leucine rich repeat contain... | NM_052888.3 | 17.6% | 16% | (many diffs) |
| 3 | human | 107133515 | SMURF2P1-LRRC37BP1 | SMURF2P1-LRRC37BP1 readthro... | NR_015341.2 | 15% | 1_696del;831_832ins52;1398_4607del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 822
- ORF length:
- 753
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaagatgtta caagcccgga agcagcacat gagcactgag ctgactattg 121 agtcggaggc gccctcagac agcagtggca tcaacttgtc aggctttggg agtgagcagc 181 tagacaccaa tgacgagagt gatgttagca gcgcactaag ttacatcttg ccttatctct 241 cactgagaaa tctaggtgat cagcttgaaa ttcagctaac cgagcagcta cggtccctca 301 tccccaacga ggatgtgaga aagttcatgt ctcatgttat ctggaccttg aaaatggaat 361 gttcagaaac acatgtgcaa gggagctgtg ccaagctcat gtcgcgaaca ggccTCCTGA 421 TGAAGCTTCT CAGCGAGCAG CAGGAAGCAA AGGCATTGAA TGTAGAATGG GATACGGACC 481 AACAAAAAAC AAATTATATT AATGAGAACA TGGAACAGAA TGAACAGAAA GAGCAGAAGT 541 CAAGTGAGCT CATGAAAGAA GTTCCAGGAT ATGACTATAA GAACAAACTC ATCTTCGCAA 601 TATCTGTGAC TGTCATACTA ATAATTTTGA TTATAATTTT TTGTTTTATA GAGGTAAAGA 661 CAATAATTAA TTCAGGTTTT CAAAATACAA TCCTGTGTTT GTGTGGATTC AGAATCCACA 721 AACTGAAAAC CAACGTCACT TTCCCACTTG ACATTCTTCT TCTGTCATTT AAGGCTGAGG 781 TGTGCTTTGT TCTTTTACTG CAATGTATAT TCCAGGATTG TTTGCCAACT TTCTTGTACA 841 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 901 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 961 AGGACGAACC CGCGACTCCA GGATTGTGAT TACGCGTTAA GTCgacaatc aacctctgga 1021 ttacaaaatt tgtgaaagat t