Construct: ORF TRCN0000467922

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016827.1_s317c1
Derived from:
ccsbBroadEn_03414
DNA Barcode:
CTCCGACATGTTCATGGGGTGAAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
YIPF1 (54432)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467922
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54432 YIPF1 Yip1 domain family member 1 NM_018982.5 100% 100%
2 human 54432 YIPF1 Yip1 domain family member 1 NR_135075.2 59.3% (many diffs)
3 human 54432 YIPF1 Yip1 domain family member 1 NR_036640.2 55.5% 1_134del;1053_1652del
4 human 54432 YIPF1 Yip1 domain family member 1 NR_036639.2 49% 1_354del;1273_1872del
5 mouse 230584 Yipf1 Yip1 domain family, member 1 NM_145550.3 83.3% 87.5% (many diffs)
6 mouse 230584 Yipf1 Yip1 domain family, member 1 XM_006502968.3 76.3% 79.7% (many diffs)
7 mouse 230584 Yipf1 Yip1 domain family, member 1 NM_001205156.1 75.6% 79% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
984
ORF length:
918
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc agcagtagat gacttgcaat ttgaagaatt tggcaatgca gccacttctc
121tgacagcaaa cccagatgcc accacagtaa acattgagga tcctggtgaa accccaaaac
181atcagccagg atccccaaga ggctcaggaa gagaagaaga tgatgagtta ctgggaaatg
241atgactctga caaaactgag ttacttgctg gacagaagaa aagctccccc ttctggacat
301ttgaatacta ccaaacattc tttgatgtgg acacctacca ggtctttgac agaattaaag
361gatctctttt gccaataccc gggaaaaact ttgtgaggtt atatatccgc agcaatccag
421atctctatgg ccccttttgg atatgtgcca cgttggtctt tgccatagca attagtggga
481atctttccaa cttcttgatc catctgggag agaagacgta ccattatgtg cccgaattcc
541gaaaagtgtc catagcagct accaTCATCT ATGCCTATGC CTGGCTGGTT CCTCTTGCAC
601TCTGGGGTTT CCTCATGTGG AGAAACAGCA AAGTTATGAA CATCGTCTCC TATTCATTTC
661TGGAGATTGT GTGTGTCTAT GGATATTCCC TCTTCATTTA TATCCCCACC GCAATACTGT
721GGATTATCCC CCAGAAAGCT GTTCGTTGGA TTCTAGTCAT GATTGCCCTG GGCATCTCAG
781GATCTCTCTT GGCAATGACA TTTTGGCCAG CTGTTCGTGA GGATAACCGA CGCGTTGCAT
841TGGCCACAAT TGTGACAATT GTGTTGCTCC ATATGCTGCT TTCTGTGGGC TGCTTGGCAT
901ACTTTTTTGA TGCACCAGAG ATGGACCATC TCCCAACAAC TACAGCTACT CCAAACCAAA
961CAGTTGCTGC AGCCAAGTCC AGCTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1021AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1081TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC TCCGACATGT
1141TCATGGGGTG AAGACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1201att

Download FASTA (ORF) (Full)