Construct: ORF TRCN0000467928
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004719.1_s317c1
- Derived from:
- ccsbBroadEn_07285
- DNA Barcode:
- GACCTGATACTATCCCCGGCGCTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MARCO (8685)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000467928
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8685 | MARCO | macrophage receptor with co... | NM_006770.3 | 99.9% | 100% | 471T>C |
| 2 | human | 8685 | MARCO | macrophage receptor with co... | XM_011512082.2 | 99.9% | 100% | 471T>C |
| 3 | human | 8685 | MARCO | macrophage receptor with co... | XM_011512083.3 | 76.6% | 76.7% | 96_97ins363;108T>C |
| 4 | human | 8685 | MARCO | macrophage receptor with co... | XM_017005171.2 | 56.4% | 51.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1626
- ORF length:
- 1560
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag aaataagaaa attctcaagg aggacgagct cttgagtgag acccaacaag 121 ctgcttttca ccaaattgca atggagcctt tcgaaatcaa tgttccaaag cccaagagga 181 gaaatggggt gaacttctcc ctagctgtgg tggtcatcta cctgatcctg ctcaccgctg 241 gcgctgggct gctggtggtc caagttctga atctgcaggc gcggctccgg gtcctggaga 301 tgtatttcct caatgacact ctggcggctg aggacagccc gtccttctcc ttgctgcagt 361 cagcacaccc tggagaacac ctggctcagg gtgcatcgag gctgcaagtc ctgcaggccc 421 aactcacctg ggtccgcgtc agccatgagc acttgctgca gcgggtagac aacttcactc 481 agaacccagg gatgttcaga atcaaaggtg aacaaggcgc cccaggtctt caaggccaca 541 agggggccat gggcatgcct ggtgcccctg gcccgccggg accacctgct gagaagggag 601 ccaagggggc tatgggacga gatggagcaa caggcccctc gggaccccaa ggcccaccgg 661 gagtcaaggg agaggcgggc ctccaaggac cccagggtgc tccagggaag caaggagcca 721 ctggcacccc aggaccccaa ggagagaagg gcagcaaagg cgatgggggt ctcattggcc 781 caaaagggga aactggaact aagggagaga aaggagacct gggtctccca ggaagcaaag 841 gggacagggg catgaaagga gatgcagggg tcatggggcc tcctggagcc caggggagta 901 aaggtgactt cgggaggcca ggcccaccag gtttggctgg ttttcctgga gctaaaggag 961 atcaaggaca acctggactg cagggtgttc cgggccctcc tggtgcagtg ggacacccag 1021 gtgccaaggg tgagcctggc agtgctggct cccctgggcg agcaggactt ccagggagcc 1081 ccgggagtcc aggagccaca ggcctgaaag gaagcaaagg ggacacagga cttcaaggac 1141 agcaaggaag aaaaggagaa tcaggagttc caggccctgc aggtgtgaag ggagaacagg 1201 ggagcccagg gctggcaggT CCCAAGGGAG CCCCTGGACA AGCTGGCCAG AAGGGAGACC 1261 AGGGAGTGAA AGGATCTTCT GGGGAGCAAG GAGTAAAGGG AGAAAAAGGT GAAAGAGGTG 1321 AAAACTCAGT GTCCGTCAGG ATTGTCGGCA GTAGTAACCG AGGCCGGGCT GAAGTTTACT 1381 ACAGTGGTAC CTGGGGGACA ATTTGCGATG ACGAGTGGCA AAATTCTGAT GCCATTGTCT 1441 TCTGCCGCAT GCTGGGTTAC TCCAAAGGAA GGGCCCTGTA CAAAGTGGGA GCTGGCACTG 1501 GGCAGATCTG GCTGGATAAT GTTCAGTGTC GGGGCACGGA GAGTACCCTG TGGAGCTGCA 1561 CCAAGAATAG CTGGGGCCAT CATGACTGCA GCCACGAGGA GGACGCAGGC GTGGAGTGCA 1621 GCGTCTGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 1681 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 1741 CTTGGCTTTA TATATCTTGT GGAAAGGACG AGACCTGATA CTATCCCCGG CGCTCACGCG 1801 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt