Construct: ORF TRCN0000468054

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017254.1_s317c1
Derived from:
ccsbBroadEn_12633
DNA Barcode:
CTCAGGGTTTGCATCCCCATCCCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CSPP1 (79848)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468054
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79848 CSPP1 centrosome and spindle pole... XM_011517611.3 57.1% 57% (many diffs)
2 human 79848 CSPP1 centrosome and spindle pole... XM_017013858.2 51.7% 51.6% (many diffs)
3 human 79848 CSPP1 centrosome and spindle pole... XM_024447284.1 48.3% 48.2% (many diffs)
4 human 79848 CSPP1 centrosome and spindle pole... NM_001291339.1 43.1% 43% (many diffs)
5 human 79848 CSPP1 centrosome and spindle pole... XM_024447283.1 40.7% 40.6% (many diffs)
6 human 79848 CSPP1 centrosome and spindle pole... XM_011517609.2 40.1% 40% (many diffs)
7 human 79848 CSPP1 centrosome and spindle pole... XM_017013856.2 37.5% 37.4% (many diffs)
8 human 79848 CSPP1 centrosome and spindle pole... XM_024447282.1 36.5% 36.4% (many diffs)
9 human 79848 CSPP1 centrosome and spindle pole... XM_017013855.2 36.3% 36.2% (many diffs)
10 human 79848 CSPP1 centrosome and spindle pole... XM_017013854.2 33.8% 33.7% (many diffs)
11 human 79848 CSPP1 centrosome and spindle pole... XM_006716477.3 33.6% 33.5% (many diffs)
12 human 79848 CSPP1 centrosome and spindle pole... NM_001363133.2 33.3% 33.2% (many diffs)
13 human 79848 CSPP1 centrosome and spindle pole... XM_024447281.1 33.3% 33.2% (many diffs)
14 human 79848 CSPP1 centrosome and spindle pole... NM_001363132.2 32.5% 32.4% (many diffs)
15 human 79848 CSPP1 centrosome and spindle pole... XM_017013852.2 31.9% 31.8% (many diffs)
16 human 79848 CSPP1 centrosome and spindle pole... XM_017013851.2 31.8% 31.8% (many diffs)
17 human 79848 CSPP1 centrosome and spindle pole... NM_001364870.1 31.8% 31.7% (many diffs)
18 human 79848 CSPP1 centrosome and spindle pole... NM_001363131.2 31.5% 31.4% (many diffs)
19 human 79848 CSPP1 centrosome and spindle pole... XM_024447279.1 31.5% 31.4% (many diffs)
20 human 79848 CSPP1 centrosome and spindle pole... NM_024790.6 30.9% 30.8% (many diffs)
21 human 79848 CSPP1 centrosome and spindle pole... XM_011517607.2 30.8% 30.7% (many diffs)
22 human 79848 CSPP1 centrosome and spindle pole... XM_024447278.1 30.8% 30.7% (many diffs)
23 human 79848 CSPP1 centrosome and spindle pole... XM_011517603.2 30.6% 30.5% (many diffs)
24 human 79848 CSPP1 centrosome and spindle pole... XM_017013850.2 30.6% 30.5% (many diffs)
25 human 79848 CSPP1 centrosome and spindle pole... NM_001364869.1 30.2% 30.2% (many diffs)
26 human 79848 CSPP1 centrosome and spindle pole... XM_017013849.2 30.2% 30.2% (many diffs)
27 human 79848 CSPP1 centrosome and spindle pole... XM_006716474.3 30.2% 30.1% (many diffs)
28 human 79848 CSPP1 centrosome and spindle pole... XM_017013848.2 29.9% 29.8% (many diffs)
29 human 79848 CSPP1 centrosome and spindle pole... XM_011517602.2 29.8% 29.7% (many diffs)
30 human 79848 CSPP1 centrosome and spindle pole... XM_017013847.2 29.7% 29.7% (many diffs)
31 human 79848 CSPP1 centrosome and spindle pole... XM_011517601.2 29.5% 29.4% (many diffs)
32 human 79848 CSPP1 centrosome and spindle pole... XM_011517600.2 29.2% 29.1% (many diffs)
33 human 79848 CSPP1 centrosome and spindle pole... XM_005251305.4 29% 28.9% (many diffs)
34 human 79848 CSPP1 centrosome and spindle pole... XM_011517599.2 28.8% 28.8% (many diffs)
35 human 79848 CSPP1 centrosome and spindle pole... XM_011517598.2 28.7% 28.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1203
ORF length:
1137
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag acagccttct cctatagttc ctgctcttca gaacaaaatt gcaagcaaac
121tccaaagacc tccttcagtt gacagcatca tacattcctt tattcatgaa agttccatgt
181ccagggcaca gtcacccccg gtacctgcca ggaaaaatca gctccgtgca gaagaggaga
241aaaaaaatgt aattatggaa ttatcagaaa tgagaaaaca gcttcgtagt gaagagaggc
301gtctacaaga gcgattgcta cacatggaca gcgatgatga aattcctatc aggaaaaagg
361aaaggaatcc catggatata tttgatatgg ctagacatcg gttgcaagct cctgtcagaa
421gacagtcccc taagggctta gacgctgcca cttttcagaa tgttcatgat tttaatgagc
481tgaaagatag agattcagaa acacgagttg atctgaaatt tatgtacctg gatcctccaa
541gagatcatca caccttagag attcagcagc aagccctgct aagagagcag cagaagaggc
601tgaacagaat aaaaatgcag gaaggtgcca aagttgactt agatgccatc ccaagtgcta
661aagtacgaga gcaaagaatg cccagagatg acactagtga tttcttgaaa aactcattat
721tggaatctga tagtgctttt attggggctt acggtgagac atatcctgcc attgaagatg
781acgtcctccc TCCACCATCA CAGTTGCCCT CTGCACGGGA GCGCAGGAGG AACAAACGGA
841AAGGACTAGA CATTGATAGC AGTCGTCCTA ATGTAGCACC AGATGGTCTC TCTCTAAAAT
901CTATATCCAG TGTAAATGTT GATGAGCTTA GAGTGAGAAA TGAGGAACGA ATGCGAAGAC
961TGAATGAATT TCACAATAAA CCTATTAATA CAGATGATGA GAGTTCACTG GTTGACCCTG
1021ATGACATCAT GAAACACATA GGGGATGACG GATCAAACTC TGTAGCAACT GAGCCCTGGC
1081TCCGCCCTGG CACTTCAGAA ACGCTGAAAC GTTTCATGGC AGAGCAGCTG AACCAGGAGC
1141AGCAGCAGAT TCCTGGAAAA CCAGGCACTT TCACTTGGCA GGGCCTGTCG ACTGCACATG
1201GTTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1261TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1321GGCTTTATAT ATCTTGTGGA AAGGACGACT CAGGGTTTGC ATCCCCATCC CCACGCGTTA
1381AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)