Construct: ORF TRCN0000468163

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003610.1_s317c1
Derived from:
ccsbBroadEn_02384
DNA Barcode:
CTCTGACGGGGTCTTTAGATCTCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SMNDC1 (10285)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468163
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10285 SMNDC1 survival motor neuron domai... NM_005871.4 100% 100%
2 human 10285 SMNDC1 survival motor neuron domai... XM_005269382.3 83.1% 83.1% 0_1ins119;2_3delTG
3 mouse 76479 Smndc1 survival motor neuron domai... NM_172429.2 90% 99.5% (many diffs)
4 mouse 76479 Smndc1 survival motor neuron domai... XM_006527441.3 90% 99.5% (many diffs)
5 mouse 76479 Smndc1 survival motor neuron domai... XM_006527440.3 88.5% 97.9% (many diffs)
6 mouse 76479 Smndc1 survival motor neuron domai... XM_006527442.3 75.4% 82.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
780
ORF length:
714
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc agaggattta gcaaagcagc tggcaagcta caaagctcag ctccagcaag
121ttgaagctgc attatctgga aatggagaaa atgaagattt gctaaaattg aagaaagatt
181tacaagaagt tatagaacta accaaagacc ttctgtcaac tcaaccttct gagacgcttg
241caagttcaga cagttttgct tctactcaac ctactcattc atggaaagta ggagacaagt
301gtatggcagt ctggagtgaa gatggacagt gttatgaagc ggagattgag gagatagatg
361aagaaaatgg caccgctgca atcaccttTG CTGGTTATGG CAATGCTGAA GTGACTCCAC
421TGTTGAACCT CAAGCCTGTA GAAGAAGGAA GGAAGGCAAA GGAGGACAGT GGCAACAAAC
481CCATGTCAAA AAAAGAAATG ATTGCCCAGC AGCGTGAATA TAAAAAGAAG AAAGCTTTGA
541AAAAAGCTCA GAGAATAAAA GAACTTGAGC AGGAAAGAGA GGACCAGAAA GTGAAATGGC
601AACAATTCAA CAACAGAGCC TATTCTAAAA ACAAAAAAGG CCAGGTAAAG AGGAGTATTT
661TTGCTTCACC TGAGAGTGTG ACTGGTAAAG TTGGAGTAGG AACCTGTGGA ATTGCTGATA
721AACCTATGAC ACAATATCAA GATACCTCTA AATACAATGT CAGGCATTTG ATGCCTCAAT
781ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
841GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
901TTTATATATC TTGTGGAAAG GACGACTCTG ACGGGGTCTT TAGATCTCTA CGCGTTAAGT
961Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)