Construct: ORF TRCN0000468191
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014410.1_s317c1
- Derived from:
- ccsbBroadEn_02289
- DNA Barcode:
- CACCAAATTACTAGTTGCAACATA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TANK (10010)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468191
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10010 | TANK | TRAF family member associat... | NM_133484.1 | 100% | 100% | |
| 2 | human | 10010 | TANK | TRAF family member associat... | NM_001199135.3 | 27.7% | 26.1% | (many diffs) |
| 3 | human | 10010 | TANK | TRAF family member associat... | NM_004180.3 | 27.7% | 26.1% | (many diffs) |
| 4 | human | 10010 | TANK | TRAF family member associat... | XM_017003096.1 | 27.7% | 26.1% | (many diffs) |
| 5 | human | 10010 | TANK | TRAF family member associat... | XM_017003097.1 | 27.7% | 26.1% | (many diffs) |
| 6 | human | 10010 | TANK | TRAF family member associat... | XM_017003095.1 | 26.3% | 24.7% | (many diffs) |
| 7 | human | 10010 | TANK | TRAF family member associat... | XM_005246207.3 | 26.1% | 24.6% | (many diffs) |
| 8 | human | 10010 | TANK | TRAF family member associat... | XM_024452335.1 | 25.9% | 24.4% | (many diffs) |
| 9 | human | 10010 | TANK | TRAF family member associat... | XM_017003094.1 | 25% | 23.5% | (many diffs) |
| 10 | human | 10010 | TANK | TRAF family member associat... | XM_017003093.1 | 24.4% | 22.9% | (many diffs) |
| 11 | human | 10010 | TANK | TRAF family member associat... | XM_024452333.1 | 24.4% | 22.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 423
- ORF length:
- 357
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga taaaaaCATT GGCGAGCAAC TCAATAAAGC GTATGAAGCC TTCCGGCAGG 121 CATGCATGGA TAGAGATTCT GCAGTAAAAG AATTACAGCA AAAGACTGAG AACTATGAGC 181 AGAGAATACG TGAACAACAG GAACAGCTGT CACTTCAACA GACTATTATT GACAAGCTAA 241 AATCTCAGTT ACTTCTTGTG AATTCCACTC AAGATAACAA TTATGGCTGT GTTCCTCTGC 301 TTGAAGACAG TGAAACAAGA AAGAATAATT TGACTCTTGA TCAGCCACAA GATAAAGTGA 361 TTTCAGGAAT AGCAAGAGAA AAACTACCAA AGGTAGACAT TGCTTCTGCA GAAAGCAGCA 421 TTTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 481 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 541 GGCTTTATAT ATCTTGTGGA AAGGACGACA CCAAATTACT AGTTGCAACA TAACGCGTTA 601 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt