Transcript: Human XM_017003093.1

PREDICTED: Homo sapiens TRAF family member associated NFKB activator (TANK), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TANK (10010)
Length:
2275
CDS:
166..1617

Additional Resources:

NCBI RefSeq record:
XM_017003093.1
NBCI Gene record:
TANK (10010)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017003093.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000303903 TCCACTCAAGATAACAATTAT pLKO_005 538 CDS 100% 15.000 21.000 N TANK n/a
2 TRCN0000107253 CCTATACAGTGTACGGATAAA pLKO.1 877 CDS 100% 13.200 18.480 N TANK n/a
3 TRCN0000300280 CCTATACAGTGTACGGATAAA pLKO_005 877 CDS 100% 13.200 18.480 N TANK n/a
4 TRCN0000331276 CAGTGACTCGGTGGTACTAAG pLKO_005 1470 CDS 100% 10.800 15.120 N TANK n/a
5 TRCN0000303964 TGCCACCTGGAGACCATAATG pLKO_005 1325 CDS 100% 13.200 9.240 N TANK n/a
6 TRCN0000303966 TTTATGCTATAGGTGATATTC pLKO_005 2053 3UTR 100% 13.200 9.240 N TANK n/a
7 TRCN0000107251 GCCTATACAGTGTACGGATAA pLKO.1 876 CDS 100% 10.800 7.560 N TANK n/a
8 TRCN0000107250 GCAGACAACATAAACATCTTT pLKO.1 2102 3UTR 100% 5.625 3.938 N TANK n/a
9 TRCN0000107252 GCAGTCCTTTGCTCCATGAAA pLKO.1 722 CDS 100% 5.625 3.938 N TANK n/a
10 TRCN0000107254 GCTGTCACTTCAACAGACTAT pLKO.1 480 CDS 100% 4.950 3.465 N TANK n/a
11 TRCN0000054846 CCATCCTTTATAGTGATGCTA pLKO.1 305 CDS 100% 3.000 2.100 N Tank n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017003093.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07531 pDONR223 100% 87.9% 87.7% None 1_174del;962C>T n/a
2 ccsbBroad304_07531 pLX_304 0% 87.9% 87.7% V5 1_174del;962C>T n/a
3 TRCN0000481327 TCACTCCACTAATATAAGTACCTC pLX_317 22.2% 87.9% 87.7% V5 1_174del;962C>T n/a
4 ccsbBroadEn_02289 pDONR223 100% 24.4% 22.9% None (many diffs) n/a
5 ccsbBroad304_02289 pLX_304 0% 24.4% 22.9% V5 (many diffs) n/a
6 TRCN0000468191 CACCAAATTACTAGTTGCAACATA pLX_317 94.6% 24.4% 22.9% V5 (many diffs) n/a
Download CSV