Construct: ORF TRCN0000468241

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002762.1_s317c1
Derived from:
ccsbBroadEn_05950
DNA Barcode:
GGACTCTTCTTTCCTCCACTGTGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCNH (902)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468241
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 902 CCNH cyclin H NM_001239.4 99.7% 100% 624A>G;939A>G
2 human 902 CCNH cyclin H NM_001364075.2 96.6% 95.6% (many diffs)
3 human 902 CCNH cyclin H XM_005248627.4 95.1% 94.8% (many diffs)
4 human 902 CCNH cyclin H NM_001363539.1 95.1% 93.6% (many diffs)
5 human 902 CCNH cyclin H NM_001199189.1 83.3% 83.5% 0_1ins159;465A>G;780A>G
6 human 902 CCNH cyclin H XM_005248629.4 79.2% 78.7% (many diffs)
7 human 902 CCNH cyclin H NM_001364076.2 79.1% 77.7% (many diffs)
8 human 902 CCNH cyclin H NR_157070.2 37.6% (many diffs)
9 human 902 CCNH cyclin H NR_157068.2 34.3% (many diffs)
10 human 902 CCNH cyclin H NR_157069.2 31.2% (many diffs)
11 human 902 CCNH cyclin H XR_001742327.2 19.6% (many diffs)
12 human 902 CCNH cyclin H NR_157071.2 18% (many diffs)
13 mouse 66671 Ccnh cyclin H NM_023243.6 89.6% 95% (many diffs)
14 mouse 66671 Ccnh cyclin H NM_001347587.1 79.8% 84.5% (many diffs)
15 mouse 66671 Ccnh cyclin H NM_001347588.1 72.5% 76.4% (many diffs)
16 mouse 66671 Ccnh cyclin H XM_006517325.3 62.4% 66.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1035
ORF length:
969
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgta ccacaacagt agtcagaagc ggcactggac cttctccagc gaggagcagc
121tggcaagact gcgggctgac gccaaccgca aattcagatg caaagccgtg gccaacggga
181aggttcttcc gaatgatcca gtctttcttg agcctcatga agaaatgaca ctctgcaaat
241actatgagaa aaggttattg gaattctgtt cggtgtttaa gccagcaatg ccaagatctg
301ttgtgggtac ggcttgtatg tatttcaaac gtttttatct taataactca gtaatggaat
361atcaccccag gataataatg ctcacttgtg catttttggc ctgcaaagta gatgaattca
421atgtatctag tcctcagttt gttggaaacc tccgggagag tcctcttgga caggagaagg
481cacttgaaca gatactggaa tatgaactac ttcttataca gcaacttaat ttccacctta
541ttgtccacaa tccttacaga ccatttgagg gcttcctcat cgacttaaag acccgctatc
601ccatattGGA GAATCCAGAG ATTTTGAGGA AAACAGCTGA TGACTTTCTT AATAGAATTG
661CATTGACGGA TGCTTACCTT TTATACACGC CTTCCCAAAT TGCCCTGACT GCCATTTTAT
721CTAGTGCCTC CAGGGCTGGA ATTACTATGG AAAGTTATTT ATCAGAGAGT CTGATGCTGA
781AAGAGAACAG AACTTGCCTG TCACAGTTAC TAGATATAAT GAAAAGCATG AGAAACTTAG
841TAAAGAAGTA TGAACCACCC AGATCTGAAG AAGTTGCTGT TCTGAAACAG AAGTTGGAGC
901GATGTCATTC TGCTGAGCTT GCACTTAACG TAATCACGAA GAAGAGGAAA GGCTATGAAG
961ATGATGATTA CGTCTCAAAG AAATCCAAAC ATGAGGAGGA AGAGTGGACT GATGACGACC
1021TGGTAGAATC TCTCTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1081CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1141TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA GGACTCTTCT TTCCTCCACT
1201GTGAACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)