Transcript: Mouse NM_023243.6

Mus musculus cyclin H (Ccnh), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Ccnh (66671)
Length:
2094
CDS:
152..1123

Additional Resources:

NCBI RefSeq record:
NM_023243.6
NBCI Gene record:
Ccnh (66671)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_023243.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000311058 TGACCGCAGCAGTACTTATTA pLKO_005 1134 3UTR 100% 15.000 21.000 N Ccnh n/a
2 TRCN0000304590 GAATATCACCCTCGGATAATA pLKO_005 443 CDS 100% 15.000 12.000 N Ccnh n/a
3 TRCN0000222747 CCTGTCACAGTTACTGGATAT pLKO.1 883 CDS 100% 10.800 8.640 N Ccnh n/a
4 TRCN0000077836 CATTGACAGATGCTTATCTTT pLKO.1 747 CDS 100% 5.625 3.938 N Ccnh n/a
5 TRCN0000302098 CATTGACAGATGCTTATCTTT pLKO_005 747 CDS 100% 5.625 3.938 N Ccnh n/a
6 TRCN0000077835 CCACAATCCATACAGACCATT pLKO.1 631 CDS 100% 4.950 3.465 N Ccnh n/a
7 TRCN0000302037 CCACAATCCATACAGACCATT pLKO_005 631 CDS 100% 4.950 3.465 N Ccnh n/a
8 TRCN0000077834 GCTACTTATCAGAGAGTCTAA pLKO.1 840 CDS 100% 4.950 3.465 N Ccnh n/a
9 TRCN0000302097 GCTACTTATCAGAGAGTCTAA pLKO_005 840 CDS 100% 4.950 3.465 N Ccnh n/a
10 TRCN0000077833 CCTTTCCATTTAGAAGCATTA pLKO.1 1428 3UTR 100% 10.800 6.480 N Ccnh n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_023243.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00240 pDONR223 100% 89.8% 95% None (many diffs) n/a
2 ccsbBroad304_00240 pLX_304 0% 89.8% 95% V5 (many diffs) n/a
3 TRCN0000470741 TAAGGGGGAGTCAGTTCCATCTCA pLX_317 31.1% 89.8% 95% V5 (many diffs) n/a
4 ccsbBroadEn_05951 pDONR223 100% 89.7% 94.7% None (many diffs) n/a
5 ccsbBroad304_05951 pLX_304 0% 89.7% 94.7% V5 (many diffs) n/a
6 TRCN0000474982 TCTTAGTCCGCCAGCATACCGTAA pLX_317 42.4% 89.7% 94.7% V5 (many diffs) n/a
7 ccsbBroadEn_05950 pDONR223 100% 89.6% 95% None (many diffs) n/a
8 ccsbBroad304_05950 pLX_304 0% 89.6% 95% V5 (many diffs) n/a
9 TRCN0000468241 GGACTCTTCTTTCCTCCACTGTGA pLX_317 44.2% 89.6% 95% V5 (many diffs) n/a
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