Construct: ORF TRCN0000468297

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005102.1_s317c1
Derived from:
ccsbBroadEn_16094
DNA Barcode:
TTAAATTAAAGATGGAAGACGGAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC26 (137196)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468297
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 137196 CCDC26 CCDC26 long non-coding RNA NR_130918.1 21.8% 1_200del;528_1495del
2 human 137196 CCDC26 CCDC26 long non-coding RNA NR_130919.1 19.8% 1_354del;682_1649del
3 human 137196 CCDC26 CCDC26 long non-coding RNA NR_130920.1 19.6% 1_371del;699_1666del
4 human 137196 CCDC26 CCDC26 long non-coding RNA NR_130917.1 19% 1_423del;751_1718del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
90
ORF end:
417
ORF length:
327
Sequence:
1TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT
61GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGAAAGATT GTGCCTGCAG CCTGGCCTGT
121TGCCCACAGC GGTCTACCTG CCACACTGGG AAAGATCGAG CAGAGACAGA GAAGAAAAGG
181AGGCTCCATT TTTCAGGCTG CTCTCCCGCA GGCTCATGTT TTGTGTTCAT GCCAGGCAGA
241GAACACAAAA TGTTCCAATA AATAAGTATC AAAGGTTAGT GGTGAAAATG AAGGAGGAGG
301AGGCATTGCG TGAAAAACTA AACATGCAAA ATATTACACA CAAAGAGAAC CAAAATGCAG
361GTTCACTGGA AATGATAGAC AATATGTTAA AACAAGAGGA GAGAAGAGAG CTGAAATACC
421CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
481TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
541ATATATCTTG GGAAAGGACG ATTAAATTAA AGATGGAAGA CGGAAACGCG TTAAGTCgac
601aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)