Construct: ORF TRCN0000468297
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005102.1_s317c1
- Derived from:
- ccsbBroadEn_16094
- DNA Barcode:
- TTAAATTAAAGATGGAAGACGGAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC26 (137196)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468297
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 137196 | CCDC26 | CCDC26 long non-coding RNA | NR_130918.1 | 21.8% | 1_200del;528_1495del | |
| 2 | human | 137196 | CCDC26 | CCDC26 long non-coding RNA | NR_130919.1 | 19.8% | 1_354del;682_1649del | |
| 3 | human | 137196 | CCDC26 | CCDC26 long non-coding RNA | NR_130920.1 | 19.6% | 1_371del;699_1666del | |
| 4 | human | 137196 | CCDC26 | CCDC26 long non-coding RNA | NR_130917.1 | 19% | 1_423del;751_1718del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 417
- ORF length:
- 327
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGAAAGATT GTGCCTGCAG CCTGGCCTGT 121 TGCCCACAGC GGTCTACCTG CCACACTGGG AAAGATCGAG CAGAGACAGA GAAGAAAAGG 181 AGGCTCCATT TTTCAGGCTG CTCTCCCGCA GGCTCATGTT TTGTGTTCAT GCCAGGCAGA 241 GAACACAAAA TGTTCCAATA AATAAGTATC AAAGGTTAGT GGTGAAAATG AAGGAGGAGG 301 AGGCATTGCG TGAAAAACTA AACATGCAAA ATATTACACA CAAAGAGAAC CAAAATGCAG 361 GTTCACTGGA AATGATAGAC AATATGTTAA AACAAGAGGA GAGAAGAGAG CTGAAATACC 421 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 481 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 541 ATATATCTTG GGAAAGGACG ATTAAATTAA AGATGGAAGA CGGAAACGCG TTAAGTCgac 601 aatcaacctc tggattacaa aatttgtgaa agatt