Construct: ORF TRCN0000468299

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005523.1_s317c1
Derived from:
ccsbBroadEn_11790
DNA Barcode:
GCCTTAGACCTTAACTAATAAATT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SEC31B (25956)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468299
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25956 SEC31B SEC31 homolog B, COPII coat... NM_015490.4 29.3% 29.1% (many diffs)
2 mouse 240667 Sec31b Sec31 homolog B (S. cerevis... NM_001033343.1 26% 26.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1110
ORF length:
1044
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gctgaaggaa cttgagcggc cagctgtcca ggcatggagc ccagccagcc
121aatacccttt gtatctggcc acaggaacat ctgcccaaca gctagattcc tccttcagca
181caaatggcac attggaaata tttgaggttg atttcaggga cccttctctg gacttgaaac
241acagaggagt cctttctgcc ttgagcaggt ttcacaagct ggtctggggg agctttggca
301gtgggcttct ggaaagctcc ggggttattg ctggcggcgg ggacaatggc atgcttattc
361tatacaatgt gacccacatc ctgtcttcgg ggaaggagcc tgtgattgct cagaaacaga
421agcacacggg ggctgtcaga gccctcgact ttaatccttt ccagggcaac ctcctggctt
481caggggccag cgattctgaa atcttcattt gggatctgaa taacttgaat gtgccaatga
541ccctgggatc caagtcacag cctccagagg acatcaaggc actgtcttgg aaccggcaag
601cccaacacat tctgtcttct gctcacccca gtggcaaggc agttgtgtgg gatctcagga
661agaatgaacc tatcatcaaa gtcagtgatc acagcaacag gatgcactgc tcaggcctgg
721cctggcatcc tgacatagcc acccagttag tgctgtgctc agaggatgat cgacttcccg
781tgattcagct gtgggacttg cgctttgccT CCTCGCCCTT GAAGGTGCTG GAGAGCCACA
841GCAGGGGGAT CTTGTCAGTG TCATGGAGCC AGGCTGATGC TGAGCTGCTG CTCACTAGTG
901CTAAGGACAG CCAGATCTTG TGCCGGAACC TGGGGAGCAG TGAGGTGGTA TATAAGCTAC
961CAACACAGAG CAGCTGGTGC TTTGATGTGC AGTGGTGCCC TCGGGACCCT TCAGTGTTCT
1021CTGCTGCCTC CTTCAACGGC TGGATCAGTT TGTACGCTGT GATGGGTAGG AGCTGGGAAG
1081TCCAGCACAT GAGACAGGCT GACAAGGTTT GCCCAACTTT CTTGTACAAA GTGGTTGATA
1141TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1201CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAGCCTT
1261AGACCTTAAC TAATAAATTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1321tgaaagatt

Download FASTA (ORF) (Full)