Construct: ORF TRCN0000468412

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013499.1_s317c1
Derived from:
ccsbBroadEn_00768
DNA Barcode:
CCCCATTGTATATAGATTGTGAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPK (3190)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468412
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3190 HNRNPK heterogeneous nuclear ribon... NM_002140.4 100% 100%
2 human 3190 HNRNPK heterogeneous nuclear ribon... NM_031263.4 100% 100%
3 human 3190 HNRNPK heterogeneous nuclear ribon... XM_005251960.2 100% 100%
4 human 3190 HNRNPK heterogeneous nuclear ribon... NM_001318188.1 99.1% 98.9% (many diffs)
5 human 3190 HNRNPK heterogeneous nuclear ribon... NM_031262.3 99.1% 98.9% (many diffs)
6 human 3190 HNRNPK heterogeneous nuclear ribon... XM_017014668.1 99.1% 98.9% (many diffs)
7 human 3190 HNRNPK heterogeneous nuclear ribon... NM_001318187.1 94.8% 94.8% 330_331ins72
8 human 3190 HNRNPK heterogeneous nuclear ribon... XM_005251963.4 94.8% 94.8% 330_331ins72
9 human 3190 HNRNPK heterogeneous nuclear ribon... XM_005251965.3 94.8% 94.8% 330_331ins72
10 human 3190 HNRNPK heterogeneous nuclear ribon... NM_001318186.1 93.9% 93.7% (many diffs)
11 human 3190 HNRNPK heterogeneous nuclear ribon... XM_011518616.2 93.9% 93.7% (many diffs)
12 human 3190 HNRNPK heterogeneous nuclear ribon... XM_017014669.1 93.9% 93.7% (many diffs)
13 human 399881 HNRNPKP3 heterogeneous nuclear ribon... NR_033868.1 52.3% (many diffs)
14 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NM_001301340.1 93.9% 100% (many diffs)
15 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NM_001301341.1 93.9% 100% (many diffs)
16 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NM_001301343.1 93.9% 100% (many diffs)
17 mouse 15387 Hnrnpk heterogeneous nuclear ribon... XM_006517103.4 93.9% 100% (many diffs)
18 mouse 15387 Hnrnpk heterogeneous nuclear ribon... XM_006517104.3 93.9% 100% (many diffs)
19 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NM_001360490.1 93.1% 98.9% (many diffs)
20 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NM_025279.3 93.1% 98.9% (many diffs)
21 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NM_001360491.1 93% 98.9% (many diffs)
22 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NM_001360493.1 92.1% 97.8% (many diffs)
23 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NM_001301344.1 88.7% 94.8% (many diffs)
24 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NM_001360494.1 88.7% 94.8% (many diffs)
25 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NM_001301345.1 87.9% 93.7% (many diffs)
26 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NM_001360495.1 87.9% 93.7% (many diffs)
27 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NR_153503.1 45.5% (many diffs)
28 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NR_153501.1 45.2% (many diffs)
29 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NR_153502.1 44.4% (many diffs)
30 mouse 15387 Hnrnpk heterogeneous nuclear ribon... NR_153504.1 42.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1458
ORF length:
1392
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga aactgaacag ccagaagaaa ccttccctaa cactgaaacc aatggtgaat
121ttggtaaacg ccctgcagaa gatatggaag aggaacaagc atttaaaaga tctagaaaca
181ctgatgagat ggttgaatta cgcattctgc ttcagagcaa gaatgctggg gcagtgattg
241gaaaaggagg caagaatatt aaggctctcc gtacagacta caatgccagt gtttcagtcc
301cagacagcag tggccccgag cgcatattga gtatcagtgc tgatattgaa acaattggag
361aaattctgaa gaaaatcatc cctaccttgg aagagggcct gcagttgcca tcacccactg
421caaccagcca gctcccgctc gaatctgatg ctgtggaatg cttaaattac caacactata
481aaggaagtga ctttgactgc gagttgaggc tgttgattca tcagagtcta gcaggaggaa
541ttattggggt caaaggtgct aaaatcaaag aacttcgaga gaacactcaa accaccatca
601agcttttcca ggaatgctgt cctcattcca ctgacagagt tgttcttatt ggaggaaaac
661ccgatagggt tgtagagtgc ataaagatca tccttgatct tatatctgag tctcccatca
721aaggacgtgc acagccttat gatcccaatt tttacgatga aacctatgat tatggtggtt
781ttacaatgat gtttgatgac cgtcgcggac gcccagtggg atttcccatg cggggaagag
841gtggttttga cagaatgcct cctggtcggg gtgggcgtcc catgcctcca tctagaagag
901attatgatga tatgagccct cgtcgaggac cacctccccc tcctcccgga cgaggcggcc
961ggggtggtag cagagctcgg aatcttcctc ttcctccacc accaccaccT AGAGGGGGAG
1021ACCTCATGGC CTATGACAGA AGAGGGAGAC CTGGAGACCG TTACGACGGC ATGGTTGGTT
1081TCAGTGCTGA TGAAACTTGG GACTCTGCAA TAGATACATG GAGCCCATCA GAATGGCAGA
1141TGGCTTATGA ACCACAGGGT GGCTCCGGAT ATGATTATTC CTATGCAGGG GGTCGTGGCT
1201CATATGGTGA TCTTGGTGGA CCTATTATTA CTACACAAGT AACTATTCCC AAAGATTTGG
1261CTGGATCTAT TATTGGCAAA GGTGGTCAGC GGATTAAACA AATCCGTCAT GAGTCGGGAG
1321CTTCGATCAA AATTGATGAG CCTTTAGAAG GATCCGAAGA TCGGATCATT ACCATTACAG
1381GAACACAGGA CCAGATACAG AATGCACAGT ATTTGCTGCA GAACAGTGTG AAGCAGTATG
1441CAGATGTTGA AGGATTCTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1501TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1561GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGACCCCATT GTATATAGAT
1621TGTGAATACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)