Transcript: Human XM_005251960.2

PREDICTED: Homo sapiens heterogeneous nuclear ribonucleoprotein K (HNRNPK), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HNRNPK (3190)
Length:
2924
CDS:
206..1600

Additional Resources:

NCBI RefSeq record:
XM_005251960.2
NBCI Gene record:
HNRNPK (3190)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005251960.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000296044 CGTTATTGTTGGTGGTTTAAA pLKO_005 1891 3UTR 100% 15.000 21.000 N HNRNPK n/a
2 TRCN0000062454 TGCCAGTGTTTCAGTCCCAGA pLKO.1 424 CDS 100% 2.160 3.024 N HNRNPK n/a
3 TRCN0000062456 TGATGTTTGATGACCGTCGCG pLKO.1 927 CDS 100% 0.540 0.756 N HNRNPK n/a
4 TRCN0000310326 TGATGTTTGATGACCGTCGCG pLKO_005 927 CDS 100% 0.540 0.756 N HNRNPK n/a
5 TRCN0000295993 AGATTTGGCTGGATCTATTAT pLKO_005 1393 CDS 100% 15.000 10.500 N HNRNPK n/a
6 TRCN0000295992 TGATCTTGGTGGACCTATTAT pLKO_005 1348 CDS 100% 15.000 10.500 N HNRNPK n/a
7 TRCN0000295994 CAGATGTTGAAGGATTCTAAT pLKO_005 1581 CDS 100% 13.200 9.240 N HNRNPK n/a
8 TRCN0000062453 CTCTGTTGTATGTTGGATTAT pLKO.1 2676 3UTR 100% 13.200 9.240 N HNRNPK n/a
9 TRCN0000096826 CCAAAGATTTGGCTGGATCTA pLKO.1 1389 CDS 100% 4.950 3.465 N Hnrnpk n/a
10 TRCN0000062457 ATGATGTTTGATGACCGTCGC pLKO.1 926 CDS 100% 1.200 0.840 N HNRNPK n/a
11 TRCN0000062455 GCCAGTGTTTCAGTCCCAGAC pLKO.1 425 CDS 100% 0.750 0.525 N HNRNPK n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005251960.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00768 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00768 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000468412 CCCCATTGTATATAGATTGTGAAT pLX_317 32.5% 100% 100% V5 n/a
4 ccsbBroadEn_06391 pDONR223 100% 99% 98.7% None (many diffs) n/a
5 ccsbBroad304_06391 pLX_304 0% 99% 98.7% V5 (many diffs) n/a
6 TRCN0000468999 AGATGCTGATCGCCCCCACGGCCG pLX_317 31.7% 99% 98.7% V5 (many diffs) n/a
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