Construct: ORF TRCN0000468430

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012583.1_s317c1
Derived from:
ccsbBroadEn_12652
DNA Barcode:
GATTCAACAATCGACCCGTCACTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CPED1 (79974)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468430
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79974 CPED1 cadherin like and PC-estera... NM_001105533.1 71.7% 71.7% (many diffs)
2 human 79974 CPED1 cadherin like and PC-estera... XM_017012649.2 70.5% 70.3% (many diffs)
3 human 79974 CPED1 cadherin like and PC-estera... XM_024446941.1 65.1% 64.4% (many diffs)
4 human 79974 CPED1 cadherin like and PC-estera... NM_024913.5 54.3% 53.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1755
ORF length:
1689
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca attaaagccg agtacttcga gtcacctttt aaaaacagtg aagccacgtg
121tgtggaaacc aggggactgg agtcgtgaac agctgaatga aacgacagtc cttgctccac
181atgaaacaat ctttcgagcc gaagatctat ctgtgattct taaagcgtat gtgttggtga
241cgtccttaac ccctttgcgt gcattcattc attcgactgg cacagtttgg aatccaccaa
301agaaaaaacg cttcactgtc aagctgcaaa cattttttga gacattcctg agagccagtt
361cacctcaaca ggcttttgac attatgaagg aagcaattgg caaactactg ctagccgctg
421aagtattcag tgaaacatct actctgggac caaagacctt ccatagatgc agattctgct
481ttcaacttct aacttttgat attggttatg gcagtttcat gtaccctgta gtgctccagg
541tacacgagca tttaaatttt caagattatg ataatatgga ttttgaggac caaaatacag
601aagaattcct tttaaatgac actttcaatt ttctcttccc taatgaatca tcactttcca
661tattttctga gatatttcag agactttata gatcagatgt tttcaagggt gaaaactatc
721aaaaggaact aaatcagtgt ctgtccttag aagaaattaa ctcaattatg actttcataa
781aggaacttgg aagtctggga caattccaac tgctcttccc atctactact cctgggattc
841agtcactgat gcatgaattt tatgatgtgg caaatcctgt gggaaatcct ggctcagtcc
901tgacccaata ctggtctctt ttaaatgtat ttgaacaatt tcagttcatg aataaaaaga
961cacagccaca tccactggaa tggaattctt tcacagaaga taagaacatt gaaaaaccac
1021aagtgccatt tgatgcaata gaaaataaaa aagctggagt tccacaaatt aaaaatgaaa
1081ataaagaaat acattgcagt gatgatgaaa acacaccatg tcatatcaag cagatcttca
1141cacatccaca tttggaacta aatcctgact ttcatccaaa gatcaaagat tattactgtg
1201aagtcccatt tgatgtggta acagtgacaa ttggagtgga aactcctaag tgtctgtgca
1261aggtgcacct gtacgagcag gcagggccaa gctttgccag ctaccctctg ggcttaggaa
1321tgaacaaaaT CTCAATATTT GTTGTGGATG AATCTCCAGC ACACGGTGAG ACTCTGATCA
1381CGTACAAACT CACCATCTAT AGAGAAGACC GCCCAAGTCT GCCCTTGTTT GAGGCCTTCA
1441CAGCATGTGG TTTTGTGCAG GATTGTGGTT TGCTGATTCA TCCAGAGGAA ACCTGTGGGT
1501TACAGCCTAT TTCTTCTGAC TACATTGAAG CCATTTTACA GTCTGAACTA AAAAGATGTC
1561CATCTGGGGA CATGAAAGGC CAGTGGATTG TGCCTTGCCT TAGTTGTTCG GACAACAGGA
1621CGTGTGACTG GAGAGAAATA ACCTGGCAGC CCCACAACTG CCAATATGGT GTCCTAACTA
1681AGCCTCAACT CCAGCAGTGC CTGGGAGGAA GGAAGTTGGG TGTCGATGTC CAGAGAGTTC
1741CTAGAAGCCG TAATTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1801CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1861TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA GATTCAACAA TCGACCCGTC
1921ACTTACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)