Construct: ORF TRCN0000468449

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004580.1_s317c1
Derived from:
ccsbBroadEn_09920
DNA Barcode:
GACCCTACTTGATAGCTATCTTAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GCSAM (257144)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468449
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 257144 GCSAM germinal center associated ... NM_152785.5 99.8% 99.4% 13C>G
2 human 257144 GCSAM germinal center associated ... XM_024453437.1 99.2% 98.8% 13C>G;217_219delCAG
3 human 257144 GCSAM germinal center associated ... NM_001190259.2 98.7% 98.3% 13C>G;27_32delCAGTTT
4 human 257144 GCSAM germinal center associated ... XM_011512627.3 98.1% 97.7% 13C>G;27_32delCAGTTT;223_225delCAG
5 human 257144 GCSAM germinal center associated ... XM_024453438.1 95.7% 94.4% (many diffs)
6 human 257144 GCSAM germinal center associated ... NM_001190260.2 91.3% 91% 13C>G;97_98ins45
7 human 257144 GCSAM germinal center associated ... XM_005247272.3 90.4% 90.4% 0_1ins51
8 human 257144 GCSAM germinal center associated ... XM_024453439.1 90.4% 90.4% 0_1ins51
9 human 257144 GCSAM germinal center associated ... XM_011512629.2 89.9% 89.9% 0_1ins51;166_168delCAG
10 human 257144 GCSAM germinal center associated ... XM_011512630.2 89.9% 89.9% 0_1ins51;166_168delCAG
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
600
ORF length:
534
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg aaattctgtg ctgagagaaa acaggcggca gcagaacact caagagatgc
121cttggaatgt gagaatgcaa agccccaaac agagaacatc cagatgctgg gatcaccata
181tcgctgaagg gtgtttctgc cttccatgga aaaaaatact catttttgaa aagaggcaag
241attcccaaaa cgaaaatgaa agaatgtcat ctactcccat ccaggacaat gttgaccaga
301cctactcaga ggagctgtgc tataccctca tcaatcatcg ggttctctgt acaaggccat
361cagggaactc tgctgaagag tactatgaga atgttccctg caaagctgag agacccagag
421agtCCTTGGG AGGAACTGAG ACTGAGTATT CACTTCTACA TATGCCTTCT ACAGACCCCA
481GGCATGCCCG ATCCCCAGAA GATGAATATG AACTTCTCAT GCCTCACAGA ATCTCCTCTC
541ACTTTCTGCA ACAGCCACGT CCACTTATGG CCCCTTCTGA GACTCAGTTT TCCCATTTAT
601ACCCAACTCT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
661GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
721TTTATATATC TTGTGGAAAG GACGAGACCC TACTTGATAG CTATCTTACA CGCGTTAAGT
781Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)