Construct: ORF TRCN0000468470

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011539.1_s317c1
Derived from:
ccsbBroadEn_03499
DNA Barcode:
CAATCCAGCACGATGTTGTAGGGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TIPIN (54962)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468470
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54962 TIPIN TIMELESS interacting protein NM_017858.3 99.8% 99.6% 158G>C
2 human 54962 TIPIN TIMELESS interacting protein XM_005254522.4 99.8% 99.6% 158G>C
3 human 54962 TIPIN TIMELESS interacting protein XM_006720594.3 99.8% 99.6% 158G>C
4 human 54962 TIPIN TIMELESS interacting protein XM_011521743.1 99.8% 99.6% 158G>C
5 human 54962 TIPIN TIMELESS interacting protein XM_017022390.1 99.8% 99.6% 158G>C
6 human 54962 TIPIN TIMELESS interacting protein XM_024449971.1 99.8% 99.6% 158G>C
7 human 54962 TIPIN TIMELESS interacting protein XM_024449972.1 99.8% 99.6% 158G>C
8 human 54962 TIPIN TIMELESS interacting protein XM_005254521.3 86.3% 86.2% 1_141del;299G>C
9 human 54962 TIPIN TIMELESS interacting protein NM_001289986.1 66.4% 66.4% 0_1ins303
10 human 54962 TIPIN TIMELESS interacting protein XM_017022391.2 66.4% 66.4% 0_1ins303
11 human 54962 TIPIN TIMELESS interacting protein XM_024449973.1 66.4% 66.4% 0_1ins303
12 human 54962 TIPIN TIMELESS interacting protein XM_024449974.1 66.4% 66.4% 0_1ins303
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
969
ORF length:
903
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct agaaccacag gagaatggcg tgattgacct accagattat gagcatgtag
121aagatgaaac ttttcctcct ttcccacctc cagcctctcc agagagacaa gatggtgaag
181gaactgagcc tgatgaagag tcaggaaatg gagcacctgt tcctgtacct ccaaagagaa
241cagttaaaag aaatataccc aagctggatg ctcagagatt aatttcagag agaggacttc
301cagccttaag gcatgtattt gataaggcaa aattcaaagg taaaggtcat gaggctgaag
361acttgaagat gctaatcaga cacatggagc actgggcaca taggctattc cctaaactgc
421agtttgagga ttttattgac agagttgaat acctgggaag taaaaaggaa gttcagacct
481gtttaaaacg aattcgactt gatctcccta ttttacatga agattttgtt agcaataatg
541atgaagttgc ggagaataat gaacatgatg tcacttctac tgaattagat cccttTCTGA
601CAAACTTATC TGAAAGTGAG ATGTTTGCTT CTGAGTTAAG TAGAAGCCTA ACAGAAGAGC
661AACAACAAAG AATTGAGAGA AATAAACAAC TGGCCTTGGA AAGAAGGCAG GCAAAGCTGC
721TGAGTAATAG TCAGACCCTA GGAAATGATA TGTTAATGAA TACACCCAGG GCACACACGG
781TTGAAGAGGT TAATACTGAT GAGGATCAAA AGGAGGAGTC AAATGGATTA AACGAAGACA
841TTCTGGACAA TCCATGTAAT GATGCTATTG CCAATACTTT AAATGAAGAG GAAACACTGC
901TGGACCAGTC TTTTAAAAAT GTGCAACAGC AACTTGATGC TACATCCAGA AATATTACTG
961AAGCTAGATA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1021CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1081TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACAATCC AGCACGATGT TGTAGGGAAC
1141GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)