Construct: ORF TRCN0000468516

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001028.1_s317c1
Derived from:
ccsbBroadEn_05488
DNA Barcode:
TCTTGTAGACCGCTTTCAGGGATG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RD3 (343035)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468516
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 343035 RD3 retinal degeneration 3, GUC... NM_001164688.1 100% 100%
2 human 343035 RD3 retinal degeneration 3, GUC... NM_183059.2 100% 100%
3 human 343035 RD3 retinal degeneration 3, GUC... XM_017001151.1 94.2% 94.2% 1_36del
4 mouse 74023 Rd3 retinal degeneration 3 NM_023727.4 83% 85.6% (many diffs)
5 mouse 74023 Rd3 retinal degeneration 3 XM_006497205.2 83% 85.6% (many diffs)
6 mouse 74023 Rd3 retinal degeneration 3 XM_006497206.3 83% 85.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
651
ORF length:
585
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc tctcatctca tggcttcggt ggaacgaggc cccatcccgg ctgtccacca
121ggagccctgc tgagatggtg ctggagacgc ttatgatgga gctgacgggg cagatgcgag
181aggctgagag gcagcagcgg gagcgcagca atgcggtcag aaaggtctgc accggtgtgg
241actacagctg gctggccagc acaccccggt ccacctatga ccTCAGCCCC ATTGAGCGGT
301TGCAGCTGGA AGATGTCTGC GTTAAGATCC ACCCATCCTA TTGTGGGCCT GCTATCCTCA
361GGTTCCGGCA GCTGCTGGCG GAGCAGGAGC CCGAGGTGCA GGAGGTGTCC CAGCTCTTCC
421GCTCGGTGCT GCAGGAGGTC CTGGAGAGGA TGAAGCAGGA AGAGGAGGCC CACAAGCTGA
481CGCGCCAGTG GAGCCTGCGG CCCCGCGGCA GCCTGGCCAC CTTCAAGACC CGCGCGCGCA
541TCTCGCCCTT CGCCAGCGAC ATCAGGACCA TCTCCGAGGA CGTGGAGCGG GACACACCGC
601CGCCACTGCG GTCCTGGAGC ATGCCCGAAT TCCGGGCGCC CAAAGCCGAC TGCCCAACTT
661TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
721CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
781CTTGTGGAAA GGACGATCTT GTAGACCGCT TTCAGGGATG ACGCGTTAAG TCgacaatca
841acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)