Construct: ORF TRCN0000468574

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004021.1_s317c1
Derived from:
ccsbBroadEn_09704
DNA Barcode:
ATCTGGCTAATGGAGCTGCTTCCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNRNP48 (154007)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468574
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 154007 SNRNP48 small nuclear ribonucleopro... NM_152551.4 99.9% 99.7% 134C>T
2 human 154007 SNRNP48 small nuclear ribonucleopro... XM_011514312.3 93.8% 93.8% 89_90ins63
3 human 154007 SNRNP48 small nuclear ribonucleopro... XR_427825.2 17.4% (many diffs)
4 mouse 67797 Snrnp48 small nuclear ribonucleopro... NM_026382.2 86.3% 86.4% (many diffs)
5 mouse 67797 Snrnp48 small nuclear ribonucleopro... XM_017315577.1 57.7% 52.5% (many diffs)
6 mouse 67797 Snrnp48 small nuclear ribonucleopro... XM_006516735.1 52.2% 53.3% (many diffs)
7 mouse 67797 Snrnp48 small nuclear ribonucleopro... XM_011244332.2 36.6% 33.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1086
ORF length:
1017
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggagggcgag cctccacctg tggaggagcg gcggcggctg caggaggagc
121tgaacgagtt cgtggagagc ggctgccgga cgttggagga ggtgaccgcg tccctgggct
181gggacctaga tagtctggat ctcggggaag aggaggcggc ggaggatgaa gttgtgatat
241gtccatacga ttccaatcat cacatgccta aatcatcttt ggcaaagcac atggcatctt
301gtagattgag gaaaatgggc tataccaaag aagaagagga tgaaatgtat aatcctgagt
361ttttctatga aaatgtgaag ataccttcga ttactttgaa taaggactca caattccaga
421taattaaaca agctagaact gcagttggga aagacagtga ttgttataat caaagaattt
481attcttcatt gcctgttgaa gttcctttga atcacaaacg gtttgtttgt gatctaactc
541aagctgatcg tcttgccctc tatgatttcg tagttgagga gacaaagaaa aagcgctctg
601attctcaaat tattgaaaat gacagcgatc tctttgtaga cttggctgcc aaaatcaatc
661aagacaatag tcgaaaaagt ccaaaaTCCT ACCTTGAAAT CCTGGCAGAA GTACGAGATT
721ATAAAAGAAG ACGCCAGTCC TATAGAGCCA AGAATGTTCA CATAACCAAG AAATCATATA
781CTGAGGTGAT TCGAGATGTG ATAAATGTGC ACATGGAAGA ACTCAGCAAT CATTGGCAAG
841AAGAGCAAGA GAAGGCAGAG GATGATGCCG AAAAGAATGA AGAAAGGCGA TCAGCTTCAG
901TAGATTCACG GCAGTCTGGT GGAAGCTATT TGGATGCTGA GTGTTCACGA CATAGAAGGG
961ATAGGAGTAG AAGCCCACAT AAAAGAAAAA GAAACAAAGA TAAGGATAAA AACTGTGAGT
1021CGAGAAGAAG GAAAGAGAGG GATGGGGAAA GACACCATAG TCATAAAAGA AGAAAGCAAA
1081AAATATTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1141TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1201CTTGGCTTTA TATATCTTGT GGAAAGGACG AATCTGGCTA ATGGAGCTGC TTCCCACGCG
1261TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)

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