Construct: ORF TRCN0000468613

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007238.1_s317c1
Derived from:
ccsbBroadEn_03290
DNA Barcode:
TACCATACACATGTCAGTCCAGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TEX264 (51368)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468613
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51368 TEX264 testis expressed 264, ER-ph... NM_001129884.2 100% 100%
2 human 51368 TEX264 testis expressed 264, ER-ph... NM_001243725.2 100% 100%
3 human 51368 TEX264 testis expressed 264, ER-ph... NM_001243726.2 100% 100%
4 human 51368 TEX264 testis expressed 264, ER-ph... NM_001278195.1 100% 100%
5 human 51368 TEX264 testis expressed 264, ER-ph... NM_015926.6 100% 100%
6 human 51368 TEX264 testis expressed 264, ER-ph... XM_006713195.3 100% 100%
7 human 51368 TEX264 testis expressed 264, ER-ph... XM_006713197.4 100% 100%
8 human 51368 TEX264 testis expressed 264, ER-ph... XM_011533805.2 100% 100%
9 human 51368 TEX264 testis expressed 264, ER-ph... NM_001243727.2 76.3% 76.3% 257_258ins222
10 human 51368 TEX264 testis expressed 264, ER-ph... XM_006713198.2 76.1% 73.8% (many diffs)
11 human 51368 TEX264 testis expressed 264, ER-ph... NR_103462.1 57.8% (many diffs)
12 human 51368 TEX264 testis expressed 264, ER-ph... NR_024012.3 56.6% (many diffs)
13 human 51368 TEX264 testis expressed 264, ER-ph... NR_103463.1 56.2% (many diffs)
14 human 51368 TEX264 testis expressed 264, ER-ph... XM_017006574.2 55.4% 52.7% (many diffs)
15 human 100996349 LOC100996349 testis expressed 264, ER-ph... NR_103470.1 13.9% (many diffs)
16 mouse 21767 Tex264 testis expressed gene 264 NM_001081654.2 85% 83% (many diffs)
17 mouse 21767 Tex264 testis expressed gene 264 NM_001286498.1 85% 83% (many diffs)
18 mouse 21767 Tex264 testis expressed gene 264 NM_011573.3 85% 83% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1005
ORF length:
939
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc ggacctgcta ctactgggcc tgattggggg cctgactctc ttactgctgc
121tgacgctgct ggcctttgcc gggtactcag ggctactggc tggggtggaa gtgagtgctg
181ggtcaccccc catccgcaac gtcactgtgg cctacaagtt ccacatgggg ctctatggtg
241agactgggcg gcttttcact gagagctgca gcatctctcc caagctccgc tccatcgctg
301tctactatga caacccccac atggtgcccc ctgataagtg ccgatgtgcc gtgggcagca
361tcctgagtga aggtgaggaa tcgccctccc ctgagctcat cgacctctac cagaaatttg
421gcttcaaggt gttctccttc ccggcaccca gccatgtggt gacagccacc ttcccctaca
481ccaccattct gtccatctgg ctggctaccc gccgtgtcca tcctgccttg gacacctaca
541tcaaggagcg gaagctgtgt gcctatcctc ggctggagat ctaccaggaa gaccagatcc
601atttcatgtg cccactggca cggcagggag acttctatgt gccTGAGATG AAGGAGACAG
661AGTGGAAATG GCGGGGGCTT GTGGAGGCCA TTGACACCCA GGTGGATGGC ACAGGAGCTG
721ACACAATGAG TGACACGAGT TCTGTAAGCT TGGAAGTGAG CCCTGGCAGC CGGGAGACTT
781CAGCTGCCAC ACTGTCACCT GGGGCGAGCA GCCGTGGCTG GGATGACGGT GACACCCGCA
841GCGAGCACAG CTACAGCGAG TCAGGTGCCA GCGGCTCCTC TTTTGAGGAG CTGGACTTGG
901AGGGCGAGGG GCCCTTAGGG GAGTCACGGC TGGACCCTGG GACTGAGCCC CTGGGGACTA
961CCAAGTGGCT CTGGGAGCCC ACTGCCCCTG AGAAGGGCAA GGAGTACCCA ACTTTCTTGT
1021ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1081AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1141GAAAGGACGA TACCATACAC ATGTCAGTCC AGTCACGCGT TAAGTCgaca atcaacctct
1201ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)