Transcript: Mouse NM_001286498.1

Mus musculus testis expressed gene 264 (Tex264), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-15
Taxon:
Mus musculus (mouse)
Gene:
Tex264 (21767)
Length:
1651
CDS:
424..1353

Additional Resources:

NCBI RefSeq record:
NM_001286498.1
NBCI Gene record:
Tex264 (21767)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001286498.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000373745 TCCATCGCTGTCTACTATGAC pLKO_005 649 CDS 100% 4.950 6.930 N TEX264 n/a
2 TRCN0000247900 CACCTAGCCATGTGGTCATAG pLKO_005 803 CDS 100% 10.800 8.640 N Tex264 n/a
3 TRCN0000190178 CTTCCTTAACCTGCCTAGCTT pLKO.1 1419 3UTR 100% 3.000 2.400 N Tex264 n/a
4 TRCN0000247901 TGCTGGCCTTTGCTGGTTATT pLKO_005 485 CDS 100% 13.200 9.240 N Tex264 n/a
5 TRCN0000247904 CCATCAAGACAAGATCCATTT pLKO_005 942 CDS 100% 10.800 7.560 N Tex264 n/a
6 TRCN0000247903 TGAAGGAGACAGAGCGGAAAT pLKO_005 1007 CDS 100% 10.800 7.560 N Tex264 n/a
7 TRCN0000247902 TGTCCTGCTCCAAGCCTAAAC pLKO_005 1466 3UTR 100% 10.800 7.560 N Tex264 n/a
8 TRCN0000189841 GCTCATCCACCTCTATCAGAA pLKO.1 753 CDS 100% 4.950 3.465 N Tex264 n/a
9 TRCN0000164708 CCATCGCTGTCTACTATGACA pLKO.1 650 CDS 100% 3.000 2.100 N TEX264 n/a
10 TRCN0000201885 CCTGGAGATCTACCATCAAGA pLKO.1 930 CDS 100% 4.950 2.970 N Tex264 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001286498.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03290 pDONR223 100% 85% 83% None (many diffs) n/a
2 ccsbBroad304_03290 pLX_304 0% 85% 83% V5 (many diffs) n/a
3 TRCN0000468613 TACCATACACATGTCAGTCCAGTC pLX_317 38.7% 85% 83% V5 (many diffs) n/a
4 TRCN0000489264 CATACTGTGCAGTTTTTCGAACGA pLX_317 38.8% 85% 83% V5 (not translated due to prior stop codon) (many diffs) n/a
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