Construct: ORF TRCN0000468718

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002594.1_s317c1
Derived from:
ccsbBroadEn_02314
DNA Barcode:
ACGTGCATACCCAGCACTGCTTTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TSPAN5 (10098)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468718
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10098 TSPAN5 tetraspanin 5 NM_005723.4 100% 100%
2 human 10098 TSPAN5 tetraspanin 5 XM_005262680.1 81.7% 81.7% 132_133ins147
3 human 10098 TSPAN5 tetraspanin 5 XR_244617.1 21.7% 1_435del;885_886ins64;1176_3333del
4 human 10098 TSPAN5 tetraspanin 5 XR_001741092.1 17.4% (many diffs)
5 mouse 56224 Tspan5 tetraspanin 5 NM_019571.5 93.1% 100% (many diffs)
6 mouse 56224 Tspan5 tetraspanin 5 XM_006501736.3 74.8% 78.5% (many diffs)
7 mouse 56224 Tspan5 tetraspanin 5 XM_006501737.3 68.1% 73.5% (many diffs)
8 mouse 56224 Tspan5 tetraspanin 5 NR_121195.1 21.6% (many diffs)
9 mouse 56224 Tspan5 tetraspanin 5 XR_375551.3 11% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
870
ORF length:
804
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc cgggaagcac tacaagggtc ctgaagtcag ttgttgcatc aaatacttca
121tatttggctt caatgtcata ttttggtttt tgggaataac atttcttgga attggactgt
181gggcatggaa tgaaaaagga gttctgtcca acatctcttc catcaccgat ctcggcggct
241ttgacccagt ttggctcttc cttgtggtgg gaggagtgat gttcattttg ggatttgcag
301ggtgcattgg agcgctacgg gaaaacactt tccttctcaa gtttttttct gtgttcctgg
361gaattatttt cttcctggag ctcactgccg gagttctagc atttgttttc aaagactgga
421tcaaagacca gctgtatttc tttataaaca acaacatcag agcatatcgg gatgacattg
481atttgcaaaa cctcatagac ttcacccagg aatattggca gtgctgtggg gcttttGGAG
541CTGATGATTG GAACCTAAAT ATTTACTTCA ATTGCACAGA TTCCAATGCA AGTCGAGAGC
601GATGTGGCGT TCCATTCTCC TGCTGCACTA AAGATCCCGC AGAAGATGTC ATCAACACTC
661AGTGTGGCTA TGATGCCAGG CAAAAACCAG AAGTTGACCA GCAGATTGTA ATCTACACGA
721AAGGCTGTGT GCCCCAGTTT GAGAAGTGGT TGCAGGACAA TTTAACCATC GTTGCTGGTA
781TTTTCATAGG CATTGCATTG CTGCAGATAT TTGGGATATG CCTGGCCCAG AATTTGGTTA
841GCGATATCGA AGCTGTCAGG GCGAGCTGGT ACCCAACTTT CTTGTACAAA GTGGTTGATA
901TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
961CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAACGTG
1021CATACCCAGC ACTGCTTTAA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1081tgaaagatt

Download FASTA (ORF) (Full)