Construct: ORF TRCN0000468766

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000438.1_s317c1
Derived from:
ccsbBroadEn_04294
DNA Barcode:
TCTCAATACCCAATGCCCTTTTTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATG10 (83734)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468766
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83734 ATG10 autophagy related 10 NM_001131028.2 100% 100%
2 human 83734 ATG10 autophagy related 10 NM_031482.5 100% 100%
3 human 83734 ATG10 autophagy related 10 XM_005248610.5 100% 100%
4 human 83734 ATG10 autophagy related 10 XM_005248611.5 100% 100%
5 human 83734 ATG10 autophagy related 10 XM_005248612.3 83.6% 83.6% 106_107ins108
6 human 83734 ATG10 autophagy related 10 XM_017009944.1 83.6% 83.6% 106_107ins108
7 human 83734 ATG10 autophagy related 10 XM_011543660.2 80.9% 80.9% 0_1ins126
8 human 83734 ATG10 autophagy related 10 XM_011543661.2 67.8% 67.7% 0_1ins210;4_5delCTinsGA
9 mouse 66795 Atg10 autophagy related 10 XM_011244551.2 70% 70% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
726
ORF length:
660
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga agaagatgag ttcattggag aaaaaacatt ccaacgttat tgtgcagaat
121tcattaaaca ttcacaacag ataggtgata gttgggaatg gagaccatca aaggactgtt
181ctgatggcta catgtgcaaa atacactttc aaattaagaa tgggtctgtg atgtcacatc
241taggagcatc tacccatgga cagacatgTC TTCCCATGGA GGAGGCTTTC GAGCTACCCT
301TGGATGATTG TGAAGTGATT GAAACTGCAG CAGCGTCCGA AGTGATTAAA TATGAGTATC
361ATGTCTTATA TTCCTGTAGC TACCAAGTGC CTGTACTTTA CTTTAGGGCA AGCTTTTTAG
421ATGGGAGACC TTTAACTCTG AAGGACATAT GGGAAGGAGT TCATGAGTGC TATAAGATGC
481GACTGCTACA GGGACCATGG GACACTATTA CGCAACAGGA ACATCCAATA CTTGGGCAAC
541CCTTTTTTGT ACTTCATCCC TGCAAGACGA ATGAATTCAT GACTCCTGTA TTAAAGAATT
601CTCAGAAAAT CAATAAGAAT GTCAACTATA TCACATCATG GCTGAGCATT GTAGGGCCAG
661TTGTTGGGCT GAATCTACCT CTGAGTTATG CCAAAGCAAC GTCTCAGGAT GAACGAAATG
721TCCCTTACCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
781TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
841CTTGGCTTTA TATATCTTGT GGAAAGGACG ATCTCAATAC CCAATGCCCT TTTTGACGCG
901TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)