Construct: ORF TRCN0000468830

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007273.1_s317c1
Derived from:
ccsbBroadEn_13238
DNA Barcode:
GTGTAAAAGATTTGCGCTGATTGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCBE1 (147372)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468830
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 147372 CCBE1 collagen and calcium bindin... NM_133459.4 52.9% 52.9% 1_573del
2 human 147372 CCBE1 collagen and calcium bindin... XM_024451091.1 52.9% 52.9% 1_573del
3 human 147372 CCBE1 collagen and calcium bindin... XM_017025556.1 46.5% 22.6% 1_573del;775_887del;1305_1306ins26
4 human 147372 CCBE1 collagen and calcium bindin... XM_017025557.1 46.5% 22.6% 1_573del;775_887del;1305_1306ins26
5 human 147372 CCBE1 collagen and calcium bindin... XM_017025558.1 35.3% 35% 1_573del;988_1057del;1098_1099ins190
6 human 147372 CCBE1 collagen and calcium bindin... XR_001753142.1 15.7% (many diffs)
7 mouse 320924 Ccbe1 collagen and calcium bindin... XM_006526021.3 55.5% 57.1% (many diffs)
8 mouse 320924 Ccbe1 collagen and calcium bindin... NM_178793.4 46% 47.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
711
ORF length:
645
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt gaaagccgga acttgctgtg ccacatgcaa ggagttctac cagatgaagc
121agaccgtgct gcagctgaag caaaagattg ctctgctccc caacaatgca gctgacctgg
181gcaagtatat cactggtgac aaggtgctgg cctcaaacac ctaccttcca ggacctcctg
241gcctgcctgg gggccagggc cctcccggct caccaggacc aaagggaagc ccaggcttcc
301ccggtatgcc aggcccTCCT GGGCAGCCCG GCCCACGGGG CTCAATGGGA CCCATGGGAC
361CATCTCCTGA TCTGTCCCAC ATTAAGCAAG GCCGGAGGGG CCCTGTGGGT CCACCAGGGG
421CACCAGGAAG AGATGGTTCT AAGGGGGAGA GAGGAGCGCC TGGGCCCAGA GGGTCTCCAG
481GACCCCCTGG TTCTTTCGAC TTCCTGCTAC TTATGCTGGC TGACATCCGC AATGACATCA
541CTGAGCTGCA GGAAAAGGTG TTCGGGCACC GGACTCACTC TTCAGCAGAG GAGTTCCCTT
601TACCTCAGGA ATTTCCCAGC TACCCAGAAG CCATGGACCT GGGCTCTGGA GATGACCATC
661CAAGAAGAAC TGAGACAAGA GACTTGAGAG CCCCCAGAGA CTTCTACCCA TACCCAACTT
721TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
781CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
841CTTGTGGAAA GGACGAGTGT AAAAGATTTG CGCTGATTGG ACGCGTTAAG TCgacaatca
901acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)