Construct: ORF TRCN0000468833

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016923.1_s317c1
Derived from:
ccsbBroadEn_09068
DNA Barcode:
ACATGTTAGATAAACGGACCAACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GDPD5 (81544)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468833
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81544 GDPD5 glycerophosphodiester phosp... NM_030792.8 99.8% 99.6% 555C>T;953A>T;1438G>A
2 human 81544 GDPD5 glycerophosphodiester phosp... XM_006718697.3 99.8% 99.6% 555C>T;953A>T;1438G>A
3 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545276.2 99.6% 99.5% (many diffs)
4 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545277.2 99.6% 99.5% (many diffs)
5 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545278.2 99.6% 99.5% (many diffs)
6 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545279.2 99.6% 99.5% (many diffs)
7 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545280.1 86.7% 74.6% (many diffs)
8 human 81544 GDPD5 glycerophosphodiester phosp... NM_001351167.1 77% 76.8% (many diffs)
9 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545281.2 76.8% 76.7% (many diffs)
10 human 81544 GDPD5 glycerophosphodiester phosp... NM_001351168.1 59.3% 59.1% 0_1ins735;218A>T;703G>A
11 human 81544 GDPD5 glycerophosphodiester phosp... XM_011545286.1 59.2% 59% (many diffs)
12 mouse 233552 Gdpd5 glycerophosphodiester phosp... NM_201352.2 87.5% 90.4% (many diffs)
13 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_017322181.1 87.5% 90.4% (many diffs)
14 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507632.1 86.8% 89.5% (many diffs)
15 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507633.1 86.8% 89.5% (many diffs)
16 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507634.1 86.8% 89.5% (many diffs)
17 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_011241738.1 86.8% 89.5% (many diffs)
18 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507635.1 83.8% 86.6% (many diffs)
19 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507636.1 78.6% 75.9% (many diffs)
20 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507637.1 75.4% 77.2% (many diffs)
21 mouse 233552 Gdpd5 glycerophosphodiester phosp... XM_006507639.1 46.5% 47.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1881
ORF length:
1815
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt gagacaccag cccctgcagt actacgagcc acagctgtgc ctctcctgcc
121tcacgggcat ctacggctgc cgttggaagc gctaccagcg ctcccatgat gataccacac
181cgtgggagcg cctctggttc ctgctcctca ccttcacctt tggcctcacg ctcacctggc
241tttacttctg gtgggaagtc cacaatgact atgatgaatt caactggtac ctctacaacc
301gcatgggcta ctggagcgac tggcccgtac ccatccttgt gaccacagct gctgccttcg
361catacatcgc tggcctcctg gtcctggcac tatgtcacat tgccgtgggg cagcagatga
421acctgcactg gctgcacaag atcgggctgg tggtcatcct ggcttccacg gtggtggcca
481tgtcggccgt ggcccagctg tgggaggacg agtgggaggt gctgctgatc tccctgcagg
541gcacagcgcc attcctgcat gtgggggctg tggcagcagt caccatgctc tcctggatcg
601tggcaggaca gttcgcccgt gcagagcgga cctcctccca ggtgaccatt ctctgtacct
661tcttcaccgt ggtgtttgcc ctctacctgg cccctctcac catctcctct ccctgcatca
721tggagaagaa agacctcggc cccaagcctg ctctcattgg ccaccgcggg gcccccatgc
781tggctccaga gcacacgctc atgtccttcc ggaaggccct cgagcagaag ctgtacgggc
841tccaggctga cattaccatc agcctggacg gcgtgccctt cctcatgcat gacaccaccc
901tgcggcgcac caccaacgtg gaggaggagt tcccggagct ggcccgcagg cctgcctcca
961tgcttaactg gaccaccctg cagagactca acgctggcca gtggttcctg aagactgtcc
1021ccttctggac agccagctcc ctgtcaccct ccgaccacag agaggcccag aaccagtcca
1081tctgcagcct ggcagagctc ctggagctgg ccaagggcaa tgccacactg ctgctcaacc
1141tgcgtgaccc gccccgggag cacccctacc gcagcagttt tatcaacgtg actctggagg
1201ccgtgctgca ctccggcttc ccccagcacc aggtcatgtg gctgcctagc aggcagaggc
1261ccctggtgcg gaaggtggct cccggcttcc aacagacatc aggctccaag gaggcagtcg
1321ccagcctgcg gagaggccac atccagcggc tgaacctgcg ctacactcag gtgtcccgcc
1381aggagctcag ggactacgcg tcctggaacc tgagtgtgaa cctctacaca gtcaacgcac
1441cgtggctctt ctccctgctg tggtgtgcgg gggtcccatc cgtcaccTCT GACAACTCCC
1501ACACCCTGTC CCAGGTGCCT TCCCCCCTCT GGATCATGCC CCCGGACGAG TACTGTCTCA
1561TGTGGGTCAC TGCCGACCTG GTCTCCTTCA CCCTCATCGT GGGCATCTTC GTGCTCCAGA
1621AGTGGCGCCT GGGTGGCATA CGGAGCTACA ACCCTGAGCA GATCATGCTG AGTGCTGCGG
1681TGCGCCGGAC CAGCCGGGAC GTCAGCATCA TGAAGGAGAA GCTTATTTTC TCAGAGATCA
1741GCGATGGTGT AGAGGTCTCC GATGTGCTCT CCGTATGTTC AGACAACAGT TATGACACAT
1801ATGCCAACAG CACCGCCACC CCTGTGGGCC CCCGAGGGGG TGGCAGCCAC ACCAAGACCC
1861TCATAGAGCG GAGTGGGCGT TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1921CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1981AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAACAT GTTAGATAAA
2041CGGACCAACC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)