Construct: ORF TRCN0000468892

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017439.1_s317c1
Derived from:
ccsbBroadEn_07946
DNA Barcode:
TCGAACATGGCGCCTAAATATTAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SAMM50 (25813)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468892
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25813 SAMM50 SAMM50 sorting and assembly... NM_015380.5 99.6% 99.5% (many diffs)
2 mouse 68653 Samm50 SAMM50 sorting and assembly... NM_178614.4 85% 95.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1473
ORF length:
1407
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg gactgtgcac gcccggagtt tggagcctct tccatcaagt ggacctgatt
121ttggaggatt aggagaagaa gctgaatttg ttgaagttga gcctgaagct aaacaggaaa
181ttcttgaaaa caaagatgtg gttgttcaac atgttcattt tgatggactt ggaaggacta
241aagataatat catcatttgt gaaattggag atgttttcaa ggccaaaaac ctaattgagg
301taatgcggaa atctcatgaa gcccgtgaaa aattgctccg tcttggaatt tttagacaag
361tggatgtttt gattgacaca tgtcaaggtg atgacgcact tccaaatggg ttagacgtta
421cctttgaagt aactgaattg aggagattaa cgggcagtta taacaccatg gttgggaaca
481atgaaggcag tatggtactt ggcctcaagc ttcctaatct tcttggtcgt gcagaaaagg
541tgacctttca gttttcctat ggaacaaaag aaacttcgta tggcctgtcc ttcttcaaac
601cacggcccgg aaacttcgaa agaaatttct ctgtaaactt atataaagtt actggacagt
661tcccttggag ctcactgcgg gagacggaca gaggaatgtc agctgagtac agttttccca
721tatggaagac cagccacact gtcaagtggg aaggcgtatg gcgagaactg ggctgcctct
781caaggacggc gtcatttgct gttcgaaaag aaagcggaca ttcactgaaa tcatctcttt
841cgcacgccat ggtcatcgat tctcggaatt cttccatctt accaaggaga ggtgctttgc
901tgaaagttaa ccaggaactg gcaggctaca ctggcgggga tgtgagcttc atcaaagaag
961attttgaact tcagttgaac aagcaactca tatttgattc agttttttca gcgtctttct
1021gggGCGGAAT GTTGGTACCC ATTGGTGATA AGCCGTCAAG CATTGCTGAT AGGTTTTACC
1081TCGGGGGACC CACAAGCGTC CGCGGATTCA GCATGCACAG CATCGGGCCA CAGAGCGAAG
1141GAGACTACCT AGGTGGAGAA GCGTACTGGG CCGGCGGCCT GCACCTCTAC ACCCCATTAC
1201CTTTCCGGCC AGGCCAGGGT GGCTTTGGAG AACTTTTCCG AACACACTTC TTTCTCAACG
1261CAGGAAACCT CTGCAACCTC AACTATGGGG AGGGCCCCAA AGCTCATATT CGTAAGCTGG
1321CTGAGTGCAT CCGCTGGTCG TACGGGGCCG GGATTGTCCT CAGGCTTGGC AACATCGCTC
1381GGTTGGAACT TAATTACTGC GTCCCCATGG GAGTACAGAC AGGTGACAGG ATATGTGATG
1441GCGTCCAGTT TGGAGCTGGG ATAAGGTTCC TGTACCCAAC TTTCTTGTAC AAAGTGGTTG
1501ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
1561GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATC
1621GAACATGGCG CCTAAATATT AGACGCGTTA AGTCgacaat caacctctgg attacaaaat
1681ttgtgaaaga tt

Download FASTA (ORF) (Full)