Transcript: Human NM_015380.5

Homo sapiens SAMM50 sorting and assembly machinery component (SAMM50), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
SAMM50 (25813)
Length:
1692
CDS:
137..1546

Additional Resources:

NCBI RefSeq record:
NM_015380.5
NBCI Gene record:
SAMM50 (25813)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_015380.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000229422 CATCGCTCGGTTGGAACTTAA pLKO_005 1444 CDS 100% 13.200 18.480 N SAMM50 n/a
2 TRCN0000229419 TAATTGAGGTAATGCGGAAAT pLKO_005 363 CDS 100% 10.800 15.120 N SAMM50 n/a
3 TRCN0000136715 CCATTGGTGATAAGCCGTCAA pLKO.1 1110 CDS 100% 4.050 5.670 N SAMM50 n/a
4 TRCN0000229420 GAGATTAACGGGCAGTTATAA pLKO_005 514 CDS 100% 15.000 10.500 N SAMM50 n/a
5 TRCN0000229421 TTGAACAAGCAACTCATATTT pLKO_005 1046 CDS 100% 15.000 10.500 N SAMM50 n/a
6 TRCN0000136064 GCGGACATTCACTGAAATCAT pLKO.1 885 CDS 100% 5.625 3.938 N SAMM50 n/a
7 TRCN0000134337 GATGTGGTTGTTCAACATGTT pLKO.1 266 CDS 100% 4.950 3.465 N SAMM50 n/a
8 TRCN0000134603 GATTAGGAGAAGAAGCTGAAT pLKO.1 198 CDS 100% 4.950 3.465 N SAMM50 n/a
9 TRCN0000134691 GTGAGCTTCATCAAAGAAGAT pLKO.1 1013 CDS 100% 4.950 3.465 N SAMM50 n/a
10 TRCN0000134865 CTAATTGAGGTAATGCGGAAA pLKO.1 362 CDS 100% 4.050 2.835 N SAMM50 n/a
11 TRCN0000134837 CGTTACCTTTGAAGTAACTGA pLKO.1 487 CDS 100% 0.300 0.210 N SAMM50 n/a
12 TRCN0000218525 AGGTGCTTTGCTGAAAGTTAA pLKO_005 961 CDS 100% 13.200 7.920 N SAMM50 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015380.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15771 pDONR223 0% 99.8% 99.7% None 1017T>C;1033A>G n/a
2 ccsbBroad304_15771 pLX_304 0% 99.8% 99.7% V5 1017T>C;1033A>G n/a
3 TRCN0000474473 TTGCTCCGACCCTCTAATGTAGCA pLX_317 41.4% 99.8% 99.7% V5 1017T>C;1033A>G n/a
4 ccsbBroadEn_07946 pDONR223 100% 99.6% 99.5% None (many diffs) n/a
5 ccsbBroad304_07946 pLX_304 0% 99.6% 99.5% V5 (many diffs) n/a
6 TRCN0000468892 TCGAACATGGCGCCTAAATATTAG pLX_317 32.2% 99.6% 99.5% V5 (many diffs) n/a
Download CSV