Construct: ORF TRCN0000468986

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003171.1_s317c1
Derived from:
ccsbBroadEn_04824
DNA Barcode:
ATGAATTATAACCACCTATTCCTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ASB17 (127247)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468986
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 127247 ASB17 ankyrin repeat and SOCS box... NM_080868.3 100% 100%
2 human 127247 ASB17 ankyrin repeat and SOCS box... XM_006710345.3 83.7% 83.7% 165_166ins144
3 human 127247 ASB17 ankyrin repeat and SOCS box... NR_026546.3 76.2% 1_113del;512_513ins62;937_1018del
4 human 127247 ASB17 ankyrin repeat and SOCS box... XM_006710346.3 73.5% 73.5% 164_165ins234
5 mouse 66772 Asb17 ankyrin repeat and SOCS box... NM_025758.4 84.6% 87.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
951
ORF length:
885
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag taaatctact aaattatgtg gtaagacttc ttgtccaaga agcaatatat
121tctgcaatct ccttgacaaa attgttaaaa gaccctccct acagtttttg ggtcagtggg
181gatatcactg ttacgaacca aggatttaca gatcactggc aaaaattctg aggtatgtgg
241acttggatgg ttttgacgca ctactcacag attacattgc atttgtggaa aaatcaggat
301accgttttga agtaagtttt aacctcgact tcactgaaat atgtgtgaat acaattctgt
361actgggtttt tgccagaaaa ggtaatcctg actttgtgga attgcttctc aagaagacaa
421aagactatgt tcaagacaga agttgtaacc tggcactgat atggagaact ttcacaccag
481tatactgtcc aagcccatta agtggcaTCA CACCTCTCTT TTATGTAGCT CAGACAAGAC
541AGTCTAATAT CTTCAAAATA CTACTGCAAT ATGGAATCTT AGAAAGAGAA AAAAACCCTA
601TCAACATTGT CTTAACAATA GTACTCTACC CTTCGAGAGT AAGAGTAATG GTTGATCGTG
661AATTGGCTGA CATCCATGAA GATGCCAAAA CATGTTTGGT ACTATGTTCC AGAGTGCTTT
721CTGTCATTTC AGTCAAGGAA ATAAAGACAC AGCTGAGTTT AGGAAGACAT CCAATTATTT
781CAAATTGGTT TGATTACATT CCTTCAACAA GATACAAAGA TCCATGTGAA CTATTACATC
841TTTGCAGACT AACCATCAGG AATCAACTAT TAACCAACAA TATGCTCCCA GATGGAATAT
901TTTCACTTCT AATTCCTGCT CGTCTACAAA ACTATCTGAA TTTAGAAATC TACCCAACTT
961TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1021CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1081CTTGTGGAAA GGACGAATGA ATTATAACCA CCTATTCCTG ACGCGTTAAG TCgacaatca
1141acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)