Construct: ORF TRCN0000469007
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006698.1_s317c1
- Derived from:
- ccsbBroadEn_11137
- DNA Barcode:
- ATGGTTTTTCTGTATGTTAGTTCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC7A2 (6542)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469007
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6542 | SLC7A2 | solute carrier family 7 mem... | NM_001370337.1 | 100% | 100% | |
| 2 | human | 6542 | SLC7A2 | solute carrier family 7 mem... | NM_001008539.4 | 96.9% | 96.8% | (many diffs) |
| 3 | human | 6542 | SLC7A2 | solute carrier family 7 mem... | NM_001370338.1 | 96.9% | 96.8% | (many diffs) |
| 4 | human | 6542 | SLC7A2 | solute carrier family 7 mem... | XM_005273611.4 | 96.9% | 96.8% | (many diffs) |
| 5 | human | 6542 | SLC7A2 | solute carrier family 7 mem... | XM_005273612.4 | 96.9% | 96.8% | (many diffs) |
| 6 | human | 6542 | SLC7A2 | solute carrier family 7 mem... | XM_017013746.1 | 96.9% | 96.8% | (many diffs) |
| 7 | human | 6542 | SLC7A2 | solute carrier family 7 mem... | NM_003046.6 | 94.2% | 94.2% | 1_120del |
| 8 | human | 6542 | SLC7A2 | solute carrier family 7 mem... | NM_001164771.2 | 91.4% | 91.2% | (many diffs) |
| 9 | mouse | 11988 | Slc7a2 | solute carrier family 7 (ca... | NM_007514.3 | 86.1% | 91.3% | (many diffs) |
| 10 | mouse | 11988 | Slc7a2 | solute carrier family 7 (ca... | NM_001044740.2 | 83.6% | 88.4% | (many diffs) |
| 11 | mouse | 11988 | Slc7a2 | solute carrier family 7 (ca... | XM_006509253.3 | 83.6% | 88.4% | (many diffs) |
| 12 | mouse | 11988 | Slc7a2 | solute carrier family 7 (ca... | XM_006509252.3 | 81% | 85.7% | (many diffs) |
| 13 | mouse | 11988 | Slc7a2 | solute carrier family 7 (ca... | XM_006509251.3 | 78.7% | 83.4% | (many diffs) |
| 14 | mouse | 11988 | Slc7a2 | solute carrier family 7 (ca... | XM_006509250.3 | 76.4% | 80.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2040
- ORF length:
- 1971
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gattccttgc agagccgcgc tgacctttgc ccgatgtctg atccggagaa 121 aaatcgtgac cctggacagt ctagaagaca ccaaattatg ccgctgctta tccaccatgg 181 acctcattgc cctgggcgtt ggaagcaccc ttggggccgg ggtttatgtc ctcgctgggg 241 aggtggccaa ggcagactcg ggccccagca tcgtggtgtc cttcctcatt gctgccctgg 301 cttcagtgat ggctggcctc tgctatgccg aatttggggc ccgtgttccc aagacggggt 361 ctgcatattt gtacacctac gtgactgtcg gagagctgtg ggccttcatc actggctgga 421 atctcatttt atcgtatgtg ataggtacat caagtgttgc aagagcctgg agtggcacct 481 ttgatgaact tcttagcaaa cagattggtc agtttttgag gacatacttc agaatgaatt 541 acactggtct tgcagaatat cccgattttt ttgctgtgtg ccttatatta cttctagcag 601 gtcttttgtc ttttggagta aaagagtctg cttgggtgaa taaagtcttc acagctgtta 661 atattctcgt ccttctgttt gtgatggttg ctgggtttgt gaaaggaaat gtggcaaact 721 ggaagattag tgaagagttt ctcaaaaata tatcagcaag tgccagagag ccaccttctg 781 aaaacggaac aagtatctat ggggctggtg gctttatgcc ttatggcttt acgggaacgt 841 tggctggtgc tgcaacttgc ttttatgcct ttgtgggatt tgactgcatt gcaacaactg 901 gtgaagaagt tcggaatccc cagaaagcta ttcccattgg aattgtgacg tctttgcttg 961 tttgctttat ggcctatttt ggggtctctg cagctttaac acttatgatg ccgtactacc 1021 tcctcgatga aaaaagcccc cttcctgtag cgtttgaata tgtgggatgg ggtcctgcca 1081 aatatgtcgt cgcagctggt tctctctgcg ccttgtcaac aagtcttctg ggctctatgt 1141 ttcctttacc ccgaattctg tttgccatgg cccgggatgg cttactgttt agatttcttg 1201 ccagagtgag taagaggcag tcaccagttg ctgccacgtt gactgcaggg gtcatttctg 1261 ctttgatggc ctttctgttt gacctgaagg cgcttgtgga catgatgtcc attggcacac 1321 tcatggccta ctctctggtg gcagcctgtg ttctcatcct caggtaccag cctggcttat 1381 cttacgacca gcccaaatgt tctcctgaga aagatggtct gggatcgtct cccagggtaa 1441 cctcgaagag tgagtcccag gtcaccatgc tgcagagaca gggcttcagc atgcggaccc 1501 tcttctgccc ctcccttctg ccaacacagc agtcagcttc tctcgtgagc tttctggtag 1561 gattcctagc tttcctcgtg ttgggcctga gtgtcttgac cacttacgga gttcatgcca 1621 tcaccaggct ggaggcctgg agcctcgctc tcctcgcgct gtttcttgtt ctcTTCGTTG 1681 CCATCGTTCT CACCATCTGG AGGCAGCCCC AGAATCAGCA AAAAGTAGCC TTCATGGTTC 1741 CATTCTTACC ATTTTTGCCA GCGTTCAGCA TCTTGGTGAA CATTTACTTG ATGGTCCAGT 1801 TAAGTGCAGA CACTTGGGTC AGATTCAGCA TTTGGATGGC AATTGGCTTC CTGATTTACT 1861 TTTCTTATGG CATTAGACAC AGCCTGGAGG GTCATCTGAG AGATGAAAAC AATGAAGAAG 1921 ATGCTTATCC AGACAACGTT CATGCAGCAG CAGAAGAAAA ATCTGCCATT CAAGCAAATG 1981 ACCATCACCC AAGAAATCTC AGTTCACCTT TCATATTCCA TGAAAAGACA AGTGAATTCT 2041 TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 2101 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 2161 TTTATATATC TTGTGGAAAG GACGAATGGT TTTTCTGTAT GTTAGTTCCA CGCGTTAAGT 2221 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt