Construct: ORF TRCN0000469046

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015165.1_s317c1
Derived from:
ccsbBroadEn_02452
DNA Barcode:
CCACTGTAACTGATTCTGACATGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NXF1 (10482)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469046
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10482 NXF1 nuclear RNA export factor 1 NM_006362.5 100% 100%
2 human 10482 NXF1 nuclear RNA export factor 1 NM_001081491.2 56.6% 55.5% (many diffs)
3 human 10482 NXF1 nuclear RNA export factor 1 XR_001747724.2 44.2% (many diffs)
4 mouse 53319 Nxf1 nuclear RNA export factor 1 NM_016813.2 87.4% 91.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1923
ORF length:
1857
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggacgagggg aagtcgtaca gcgaacacga tgatgaacgc gttaatttcc
121ctcaaagaaa gaagaaaggc cggggtccct tccggtggaa atatggtgaa ggaaaccgta
181ggtctggaag aggcggttct ggtattcggt cttcccgcct tgaggaagat gatggagatg
241tggcaatgag tgatgcccag gatggtcccc gagtacgata caacccctat accacccgac
301ctaaccgtcg gggtgatact tggcatgatc gagatcgcat tcatgttact gtgcggagag
361acagagctcc tccagagaga ggaggggctg gcaccagcca ggatgggacc tcaaagaact
421ggttcaagat tacaattcct tatggcagaa agtatgacaa ggcatggctc ctgagcatga
481ttcagagcaa gtgcagtgtg cccttcaccc ctattgagtt tcactatgag aatacacggg
541cccagttctt cgttgaagac gccagtactg cctctgcatt gaaggctgtc aactataaga
601ttttggatcg ggagaaccga aggatatcta tcatcatcaa ctcttctgct ccaccccaca
661ctatactgaa tgaactgaag ccagaacaag tagaacagct aaagctgatc atgagcaaac
721gatacgatgg ctcccaacaa gcccttgacc tcaaaggcct ccgttcagac ccagatttgg
781tggcccagaa cattgacgtt gtcctgaatc gcagaagctg tatggcagct accctgagga
841tcattgaaga gaacatccct gagctattgt ccttgaactt gagcaacaac aggctgtaca
901ggctggatga catgtctagc attgttcaga aggcacccaa cctgaagatc ctaaaccttt
961ctggaaatga attgaagtct gagcgggaat tggacaagat aaaggggctg aagctagaag
1021agctctggct cgatggaaac tccctgtgtg acaccttccg agaccagtcc acctacatca
1081gcgccattcg cgaacgattt cccaagttac tacgcctgga tggccatgag ctacccccac
1141caattgcctt tgatgttgaa gcccccacga cgttaccgcc ctgcaaggga agctattttg
1201gaacagaaaa cttgaagagt ctggtcttgc acttcctgca acagtactat gcaatttacg
1261actctggaga ccgacaaggg ctcctggatg cctaccatga tggggcctgc tgttccctga
1321gcattccttt cattcctcag aaccctgccc gaagcagctt agccgagtat ttcaaggata
1381gcagaaatgt gaagaagctt aaagacccta ccttgcggtt ccggctgctg aagcacacgc
1441gtctcaacgt tgttgccttc ctcaatgagt tgcccaaaac ccagcacgac gtcaattccT
1501TCGTGGTAGA CATAAGCGCC CAGACAAGCA CATTGCTGTG TTTTTCTGTC AATGGAGTCT
1561TCAAGGAAGT GGACGGAAAG TCCCGGGATT CTTTGCGAGC CTTCACCCGG ACATTCATTG
1621CTGTTCCTGC TAGCAATTCA GGGCTATGTA TTGTAAATGA TGAGCTATTT GTGCGGAATG
1681CCAGTTCTGA AGAGATCCAA AGAGCCTTCG CTATGCCTGC ACCCACGCCT TCCTCCAGCC
1741CGGTGCCCAC CCTCTCTCCA GAGCAGCAGG AAATGTTGCA AGCATTCTCT ACCCAGTCTG
1801GCATGAACCT CGAGTGGTCC CAGAAGTGCC TTCAGGACAA CAACTGGGAC TACACCAGAT
1861CTGCCCAGGC CTTCACTCAT CTCAAGGCCA AGGGCGAGAT CCCAGAAGTG GCATTCATGA
1921AGTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1981TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
2041GGCTTTATAT ATCTTGTGGA AAGGACGACC ACTGTAACTG ATTCTGACAT GCACGCGTTA
2101AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)