Construct: ORF TRCN0000469153
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012189.1_s317c1
- Derived from:
- ccsbBroadEn_15449
- DNA Barcode:
- TTAATGTCGATCTGAGGGCATCCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HNRNPC (3183)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469153
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | NM_001077443.1 | 100% | 100% | |
| 2 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | NM_004500.3 | 100% | 100% | |
| 3 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_006720125.3 | 100% | 100% | |
| 4 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_011536712.2 | 100% | 100% | |
| 5 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_017021252.2 | 100% | 100% | |
| 6 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_017021253.2 | 100% | 100% | |
| 7 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_024449558.1 | 100% | 100% | |
| 8 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_024449559.1 | 100% | 100% | |
| 9 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | NM_001077442.1 | 95.7% | 95.7% | 317_355del |
| 10 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | NM_031314.2 | 95.7% | 95.7% | 317_355del |
| 11 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_011536708.1 | 95.7% | 95.7% | 317_355del |
| 12 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_011536709.3 | 95.7% | 95.7% | 317_355del |
| 13 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_011536710.2 | 95.7% | 95.7% | 317_355del |
| 14 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_011536711.2 | 95.7% | 95.7% | 317_355del |
| 15 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_024449556.1 | 95.7% | 95.7% | 317_355del |
| 16 | human | 3183 | HNRNPC | heterogeneous nuclear ribon... | XM_024449557.1 | 95.7% | 95.7% | 317_355del |
| 17 | human | 343069 | HNRNPCL1 | heterogeneous nuclear ribon... | NM_001013631.2 | 94.6% | 90.7% | (many diffs) |
| 18 | human | 440563 | HNRNPCL2 | heterogeneous nuclear ribon... | NM_001136561.3 | 93.5% | 88.3% | (many diffs) |
| 19 | human | 649330 | HNRNPCL3 | heterogeneous nuclear ribon... | NM_001146181.2 | 93.1% | 88.3% | (many diffs) |
| 20 | human | 101060301 | HNRNPCL4 | heterogeneous nuclear ribon... | NM_001302551.1 | 93% | 88.3% | (many diffs) |
| 21 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | NM_001170983.1 | 92.7% | 97.6% | (many diffs) |
| 22 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_006518578.2 | 92.7% | 97.6% | (many diffs) |
| 23 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315857.1 | 92.7% | 97.6% | (many diffs) |
| 24 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315858.1 | 92.7% | 97.6% | (many diffs) |
| 25 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | NM_001170984.1 | 92.4% | 97.2% | (many diffs) |
| 26 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_006518581.2 | 92.4% | 97.2% | (many diffs) |
| 27 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315859.1 | 92.4% | 97.2% | (many diffs) |
| 28 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | NM_001170981.1 | 90.5% | 95.3% | (many diffs) |
| 29 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | NM_001170982.1 | 90.5% | 95.3% | (many diffs) |
| 30 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315855.1 | 90.5% | 95.3% | (many diffs) |
| 31 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315856.1 | 90.5% | 95.3% | (many diffs) |
| 32 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_006518574.2 | 88.8% | 93.4% | (many diffs) |
| 33 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315850.1 | 88.8% | 93.4% | (many diffs) |
| 34 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315851.1 | 88.8% | 93.4% | (many diffs) |
| 35 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_011244965.2 | 88.4% | 93.1% | (many diffs) |
| 36 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315852.1 | 88.4% | 93.1% | (many diffs) |
| 37 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315853.1 | 88.4% | 93.1% | (many diffs) |
| 38 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315854.1 | 88.4% | 93.1% | (many diffs) |
| 39 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | NM_016884.3 | 86.8% | 91.4% | (many diffs) |
| 40 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_006518571.3 | 86.8% | 91.4% | (many diffs) |
| 41 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_006518572.3 | 86.8% | 91.4% | (many diffs) |
| 42 | mouse | 15381 | Hnrnpc | heterogeneous nuclear ribon... | XM_017315849.1 | 86.8% | 91.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 945
- ORF length:
- 879
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc cagcaacgtt accaacaaga cagatcctcg ctccatgaac tcccgtgtat 121 tcattgggaa tctcaacact cttgtggtca agaaatctga tgtggaggca atcttttcga 181 agtatggcaa aattgtgggc tgctctgttc ataagggctt tgccttcgtt cagtatgtta 241 atgagagaaa tgcccgggct gctgtagcag gagaggatgg cagaatgatt gctggccagg 301 ttttagatat taacctggct gcagagccaa aagtgaaccg aggaaaagca ggtgtgaaac 361 gatctgcagc ggagatgtac ggctcctctt ttgacttgga ctatgacttt caacgggact 421 attatgatag gatgtacagt tacccagcac gtgtacctcc tcctcctcct attgctcggg 481 ctgtagtgcc ctcgaaacgt cagcgtgtat caggaaacac ttcacgaagg ggcaaaagtg 541 gcttcaattc taagagtgga cagcggggat cTTCCAAGTC TGGAAAGTTG AAAGGAGATG 601 ACCTTCAGGC CATTAAGAAG GAGCTGACCC AGATAAAACA AAAAGTGGAT TCTCTCCTGG 661 AAAACCTGGA AAAAATTGAA AAGGAACAGA GCAAACAAGC AGTAGAGATG AAGAATGATA 721 AGTCAGAAGA GGAGCAGAGC AGCAGCTCCG TGAAGAAAGA TGAGACTAAT GTGAAGATGG 781 AGTCTGAGGG GGGTGCAGAT GACTCTGCTG AGGAGGGGGA CCTACTGGAT GATGATGATA 841 ATGAAGATCG GGGGGATGAC CAGCTGGAGT TGATCAAGGA TGATGAAAAA GAGGCTGAGG 901 AAGGAGAGGA TGACAGAGAC AGCGCCAATG GCGAGGATGA CTCTTACCCA ACTTTCTTGT 961 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1021 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1081 GAAAGGACGA TTAATGTCGA TCTGAGGGCA TCCGACGCGT TAAGTCgaca atcaacctct 1141 ggattacaaa atttgtgaaa gatt