Construct: ORF TRCN0000469192
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014743.1_s317c1
- Derived from:
- ccsbBroadEn_10664
- DNA Barcode:
- GCCGCCACACTCGGCTTAGATCTC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CLEC19A (728276)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469192
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 728276 | CLEC19A | C-type lectin domain contai... | NM_001256720.2 | 56.3% | 45.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 345
- ORF length:
- 276
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gcaaaggtgg acactgtggg ctgcagcctt cctgaccctc CACTCTGCAC 121 AGGCCTTTCC ACAAACAGAC ATCAGTATCA GTCCAGCCCT GCCAGAGCTG CCCCTGCCTT 181 CCCTGTGCCC CCTGTTCTGG ATGGAGTTCA AAGGCCACTG CTATCGATTC TTCCCTCTCA 241 ATAAGACCTG GGCTGAGGCC GACCTCTACT GTTCTGAGTT CTCTGTGGGC AGGAAGTCCG 301 CCAAGCTGGC CTCCATCCAC AGGTCAAATC CAGAGATGCC CATGTAGGAC CGGCCACATA 361 TGGGTGACTT AATGAAAAAT GGAGGCCGAA TTGGATCATA TCCTCTATTT ACTTTGGTCC 421 AGGAAGCTGG GAGGAGAATG TCTTTGTATA TGACCTCGTG AACAGCTGTG TTCCCGGCAT 481 CCCAGCTGAC GTCTGGACAG GCCTTCATGA TCACAGACAG GTGAGAAAGC AGTGGCCATT 541 GGGCCCCCTT GGAAGCTCCA GCCAGGATTC TATTTTGATT TTGCCAACTT TCTTGTACAA 601 AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA 661 ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA 721 GGACGAGCCG CCACACTCGG CTTAGATCTC ACGCGTTAAG TCgacaatca acctctggat 781 tacaaaattt gtgaaagatt