Construct: ORF TRCN0000469203

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001764.1_s317c1
Derived from:
ccsbBroadEn_01130
DNA Barcode:
CATCAGGACGTAAAATTGATAAGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
OVOL1 (5017)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469203
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5017 OVOL1 ovo like transcriptional re... NM_004561.4 100% 100%
2 human 5017 OVOL1 ovo like transcriptional re... XM_005274018.3 76.7% 76.7% 0_1ins186
3 human 5017 OVOL1 ovo like transcriptional re... XM_011545067.2 76.7% 76.7% 0_1ins186
4 human 5017 OVOL1 ovo like transcriptional re... XM_011545068.3 76.7% 76.7% 0_1ins186
5 human 5017 OVOL1 ovo like transcriptional re... XM_017017837.1 76.7% 76.7% 0_1ins186
6 human 5017 OVOL1 ovo like transcriptional re... XM_017017838.2 76.7% 76.7% 0_1ins186
7 mouse 18426 Ovol1 ovo like zinc finger 1 NM_019935.3 90.1% 95.5% (many diffs)
8 mouse 18426 Ovol1 ovo like zinc finger 1 XM_011248605.2 78.6% 83.1% (many diffs)
9 mouse 18426 Ovol1 ovo like zinc finger 1 XM_006531675.3 68.7% 73% (many diffs)
10 mouse 18426 Ovol1 ovo like zinc finger 1 XM_006531676.3 68.7% 73% (many diffs)
11 mouse 18426 Ovol1 ovo like zinc finger 1 XM_011248606.2 68.7% 73% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
867
ORF length:
801
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc ccgcgcgttc ctggtgaaga agccgtgcgt ctccacgtgc aagaggaact
121ggagcgagct ccccgacgag gagcgcggcg agatctacgt gccagtcagc ctgggcttct
181gcccaccaca gccctaccgg gagccggaac cctctgtggc cgaaccccct tcctgcccgc
241tggctttgaa catgagcctt cgagactcta gctacagcat ggcccccggg ccctgtgtgg
301tggcccagct gccctctgaa gacatgggcc acttgacaga cccccagagc agagaccatg
361gcttcctgcg caccaagatg aaggtgaccc ttggggacag tcccAGTGGA GACCTGTTCA
421CCTGCCGTGT CTGCCAGAAG GCCTTCACCT ACCAGCGCAT GCTGAACCGC CACATGAAGT
481GTCACAACGA CGTCAAGAGG CACCTCTGCA CGTACTGCGG GAAGGGCTTC AATGACACCT
541TCGACCTCAA GAGACACGTC CGAACTCACA CTGGCGTGCG GCCCTACAAG TGCAGCCTGT
601GTGACAAGGC CTTCACGCAG CGCTGCTCTC TGGAGTCTCA CCTCAAGAAG ATCCATGGTG
661TGCAGCAGAA GTACGCGTAC AAGGAGCGGC GGGCCAAGCT GTACGTGTGT GAGGAGTGCG
721GCTGCACATC TGAGAGCCAG GAGGGCCACG TCCTGCACCT GAAGGAGCAC CACCCTGACA
781GCCCGCTGCT GCGCAAGACC TCCAAGAAGG TGGCCGTGGC ACTACAGAAC ACTGTCACTT
841CCCTGCTGCA GGGCAGCCCC CACCTGTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG
901GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
961AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACATCAGGA
1021CGTAAAATTG ATAAGTACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1081aagatt

Download FASTA (ORF) (Full)