Construct: ORF TRCN0000469530

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015273.1_s317c1
Derived from:
ccsbBroadEn_03840
DNA Barcode:
CGCTACACTAATTACGTTCGAACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VAT1L (57687)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469530
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57687 VAT1L vesicle amine transport 1 like NM_020927.3 99.9% 100% 468C>G
2 mouse 270097 Vat1l vesicle amine transport pro... NM_173016.3 88.7% 98% (many diffs)
3 mouse 270097 Vat1l vesicle amine transport pro... XM_011248394.1 76.3% 81.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1323
ORF length:
1257
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc caaggaaggc gtggagaagg cggaggagac ggagcaaatg atcgagaagg
121aggcaggcaa ggagccggcg gagggcggcg gcggcgacgg ctcgcaccgc ctcggggacg
181cccaggagat gcgcgcggtg gtgctggctg gcttcggggg gctcaacaag ctgcggctct
241tcaggaaggc catgcccgag cctcaggacg gcgagctcaa gatccgcgtc aaagcctgtg
301gattaaactt cattgacttg atggtgcgac aagggaatat tgacaaccct cccaagactc
361ccctggtgcc aggatttgag tgttctggga ttgttgaagc tctgggggac agcgtgaaag
421gatatgagat tggagaccgt gtcatggcat ttgtcaatta caatgcctgg gcagaggtgg
481tctgcacacc agtggagttt gtctacaaga tcccggatga catgagcttc tcggaggctg
541ctgcattccc catgaacttc gtcacagcct atgtgatgct gtttgaagtt gccaacctcc
601gggaagggat gtctgtgctc gtgcactcag ctggtggggg cgtgggtcaa gctgtggctc
661agctgtgttc cactgtcccc aacgtgactg tctttggaac agcctctact ttcaagcatg
721aagcaatcaa agactctgtg acccacctct ttgacagaaa tgcagactac gtgcaagaag
781ttaaaagaat ctctgctgaa ggtgtggaca tcgttttgga ttgcctctgt ggggacaaca
841ctggaaaagg tctcagtctt ctcaaacccc tgggaaccTA CATTTTATAT GGCTCATCCA
901ACATGGTAAC TGGAGAGACC AAGAGCTTCT TCAGCTTTGC AAAATCATGG TGGCAGGTGG
961AGAAGGTGAA CCCCATCAAG CTGTATGAGG AGAACAAAGT CATCGCGGGG TTTTCCCTTT
1021TAAATCTGCT CTTCAAACAA GGCCGGGCGG GCCTCATTCG GGGAGTGGTG GAAAAACTCA
1081TAGGGCTCTA CAACCAGAAG AAGATCAAGC CTGTGGTGGA CTCCTTGTGG GCTCTGGAGG
1141AGGTGAAGGA GGCCATGCAG CGGATTCACG ACCGAGGGAA CATTGGCAAG TTAATTCTGG
1201ATGTAGAAAA GACCCCAACT CCACTGATGG CCAATGACAG CACAGAGACC AGTGAAGCAG
1261GGGAAGAGGA GGAGGACCAC GAGGGAGACA GCGAGAACAA GGAGCGGATG CCCTTTATCC
1321AGTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1381TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1441GGCTTTATAT ATCTTGTGGA AAGGACGACG CTACACTAAT TACGTTCGAA CCACGCGTTA
1501AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)