Construct: ORF TRCN0000469540

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001773.1_s317c1
Derived from:
ccsbBroadEn_07751
DNA Barcode:
CACACAGACACCCCGAGGCTCCTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KRR1 (11103)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469540
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11103 KRR1 KRR1 small subunit processo... NM_007043.7 99.9% 99.7% 206A>G
2 mouse 52705 Krr1 KRR1, small subunit (SSU) p... NM_178610.4 85.4% 91.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1209
ORF length:
1143
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gtctccctcg ctggagcggc cagaaaaagg cgctggaaaa agtgaatttc
121gtaaccagaa gccgaagccg gagaaccaag atgaatcaga actccttacg gttcctgatg
181gttggaagga accagctttt tccaaagagg acaatcccag aggacttttg gaggagagca
241gtttcgcaac tttgttccca aaatacaggg gagcttactt gaaagagtgt tggccattgg
301tgcagaaagc cttaaatgaa catcatgtta atgcaaccct ggacctgatc gaaggcagca
361tgactgtttg tactacaaag aagacttttg atccatatat catcattagg gccagagatc
421tgataaaact gttagcaagg agtgtttcat ttgaacaggc agtacgaatt cttcaggatg
481atgttgcatg tgacatcatt aaaataggtt ctttagtaag gaataaagag agatttgtaa
541aacgaagaca acggcttatt ggtcccaaag gatctacatt gaaggcattg gaactcttaa
601ctaattgtta cattatggtt cagggaaaca cagtttcagc cattggacct tttagtggct
661taaaagaggt tagaaaagta gtccttgata ctatgaagaa tattcatcca atttataaca
721ttaaaagctt aatgattaag agagagttgg caaaagattc TGAATTACGA TCACAAAGTT
781GGGAGAGATT TTTGCCACAG TTCAAACACA AAAATGTGAA TAAACGCAAG GAACCAAAGA
841AAAAAACTGT TAAGAAAGAA TATACGCCAT TCCCACCACC ACAACCAGAA AGTCAGATCG
901ATAAAGAATT GGCTAGTGGT GAATACTTTT TGAAGGCAAA TCAGAAGAAG CGGCAGAAAA
961TGGAAGCAAT AAAGGCTAAA CAAGCAGAAG CCATCAGTAA GAGACAAGAG GAAAGAAACA
1021AAGCATTTAT TCCACCTAAG GAAAAACCAA TTGTGAAACC TAAGGAAGCT TCTACTGAAA
1081CTAAAATTGA TGTGGCCAGC ATCAAGGAAA AGGTTAAGAA AGCAAAGAAT AAGAAACTGG
1141GAGCTCTTAC AGCTGAAGAA ATTGCACTTA AGATGGAGGC AGATGAAAAG AAAAAGAAGA
1201AAAAAAAGTA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1261CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1321TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACACACA GACACCCCGA GGCTCCTTAC
1381GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)