Transcript: Mouse NM_178610.4

Mus musculus KRR1, small subunit (SSU) processome component, homolog (yeast) (Krr1), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Krr1 (52705)
Length:
4990
CDS:
99..1241

Additional Resources:

NCBI RefSeq record:
NM_178610.4
NBCI Gene record:
Krr1 (52705)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_178610.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000102259 AGCCAGAGAGTCAGATTGATA pLKO.1 913 CDS 100% 5.625 7.875 N Krr1 n/a
2 TRCN0000366349 GAACGAAACAAAGCGTTTATT pLKO_005 1041 CDS 100% 15.000 12.000 N Krr1 n/a
3 TRCN0000375004 GAAGAATATCCATCCAATTTA pLKO_005 725 CDS 100% 15.000 12.000 N Krr1 n/a
4 TRCN0000366297 GTTGCGTGTGACATCATTAAA pLKO_005 513 CDS 100% 15.000 10.500 N Krr1 n/a
5 TRCN0000376705 AGAGAAGACAGCGGCTTATTG pLKO_005 571 CDS 100% 13.200 9.240 N Krr1 n/a
6 TRCN0000102257 CCAGAGAGTCAGATTGATAAA pLKO.1 915 CDS 100% 13.200 9.240 N Krr1 n/a
7 TRCN0000374945 CCATTGGTTGGTCTTCATAAT pLKO_005 1517 3UTR 100% 13.200 9.240 N Krr1 n/a
8 TRCN0000102258 CGCAACCTTGTTCCCGAAATA pLKO.1 275 CDS 100% 13.200 9.240 N Krr1 n/a
9 TRCN0000375005 TTGACCCTTACATCATCATTA pLKO_005 418 CDS 100% 13.200 9.240 N Krr1 n/a
10 TRCN0000102255 CGTGACCTTGATTTGGCTTTA pLKO.1 2429 3UTR 100% 10.800 7.560 N Krr1 n/a
11 TRCN0000102256 GCTCTTACAAAGAGGCAGGAA pLKO.1 1020 CDS 100% 2.640 1.848 N Krr1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178610.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07751 pDONR223 100% 85.4% 91.8% None (many diffs) n/a
2 ccsbBroad304_07751 pLX_304 0% 85.4% 91.8% V5 (many diffs) n/a
3 TRCN0000469540 CACACAGACACCCCGAGGCTCCTT pLX_317 39.4% 85.4% 91.8% V5 (many diffs) n/a
4 ccsbBroadEn_07753 pDONR223 100% 85.4% 91.6% None (many diffs) n/a
5 ccsbBroad304_07753 pLX_304 0% 85.4% 91.6% V5 (many diffs) n/a
6 ccsbBroadEn_07752 pDONR223 100% 85.3% 91.8% None (many diffs) n/a
7 ccsbBroad304_07752 pLX_304 0% 85.3% 91.8% V5 (many diffs) n/a
8 TRCN0000473441 CATCTCTCAGTACAGCCTGTAGCC pLX_317 38.6% 85.3% 91.8% V5 (many diffs) n/a
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